Variant report

Variant	rs73004400
Chromosome Location	chr1:149866401-149866402
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149865594..149867188-chr1:150039025..150040979,2	MCF-7	breast:
2	chr1:149864293..149867071-chr1:149981547..149984107,3	K562	blood:
3	chr1:149864943..149867381-chr1:149988938..149991665,2	MCF-7	breast:
4	chr1:149865636..149867421-chr1:149950508..149953456,2	K562	blood:
5	chr1:149865571..149867980-chr1:149981727..149983638,2	K562	blood:

Variant related genes	Relation type
ENSG00000163113	Chromatin interaction
ENSG00000136631	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1556934	1.00[AMR][1000 genomes]
rs15916	0.83[AMR][1000 genomes]
rs16832989	1.00[AMR][1000 genomes]
rs16832993	1.00[AMR][1000 genomes]
rs16833048	1.00[AMR][1000 genomes]
rs16836857	1.00[AMR][1000 genomes]
rs16837054	1.00[AMR][1000 genomes]
rs16837367	1.00[AMR][1000 genomes]
rs16837593	1.00[AMR][1000 genomes]
rs16838449	1.00[AMR][1000 genomes]
rs16838646	1.00[AMR][1000 genomes]
rs16841141	1.00[AMR][1000 genomes]
rs16841623	1.00[AMR][1000 genomes]
rs16841697	1.00[AMR][1000 genomes]
rs56929499	1.00[AMR][1000 genomes]
rs57020352	1.00[AMR][1000 genomes]
rs57182882	1.00[AMR][1000 genomes]
rs57513077	1.00[AMR][1000 genomes]
rs58100431	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58137104	0.83[AMR][1000 genomes]
rs58688107	1.00[AMR][1000 genomes]
rs58777569	1.00[AMR][1000 genomes]
rs59462540	1.00[AMR][1000 genomes]
rs59709800	1.00[AMR][1000 genomes]
rs59934949	1.00[AMR][1000 genomes]
rs60631776	1.00[AMR][1000 genomes]
rs6664973	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6680574	1.00[AMR][1000 genomes]
rs6694482	1.00[AMR][1000 genomes]
rs6700399	1.00[AMR][1000 genomes]
rs73004328	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73004398	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006303	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006306	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006313	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006316	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006318	1.00[AMR][1000 genomes]
rs73006327	1.00[AMR][1000 genomes]
rs73006333	1.00[AMR][1000 genomes]
rs73008163	1.00[AMR][1000 genomes]
rs73008167	1.00[AMR][1000 genomes]
rs73008171	1.00[AMR][1000 genomes]
rs73008191	1.00[AMR][1000 genomes]
rs73008199	1.00[AMR][1000 genomes]
rs73008201	1.00[AMR][1000 genomes]
rs73010104	1.00[AMR][1000 genomes]
rs73010113	1.00[AMR][1000 genomes]
rs73010183	1.00[AMR][1000 genomes]
rs73010186	1.00[AMR][1000 genomes]
rs73010189	1.00[AMR][1000 genomes]
rs73011904	1.00[AMR][1000 genomes]
rs73011906	1.00[AMR][1000 genomes]
rs73011909	1.00[AMR][1000 genomes]
rs73011910	1.00[AMR][1000 genomes]
rs73011912	1.00[AMR][1000 genomes]
rs73011913	1.00[AMR][1000 genomes]
rs73011915	1.00[AMR][1000 genomes]
rs73011930	0.83[AMR][1000 genomes]
rs73016112	1.00[AMR][1000 genomes]
rs7523560	1.00[AMR][1000 genomes]
rs7543861	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432820	chr1:148921404-149920927	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	784 gene(s)	inside rSNPs	diseases
2	nsv831525	chr1:149701537-149878033	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
3	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149860800-149870600	Weak transcription	HepG2	liver
2	chr1:149860800-149871200	Weak transcription	Right Atrium	heart
3	chr1:149861000-149871000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:149861400-149870800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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