Variant report

Variant	rs73008163
Chromosome Location	chr1:149919487-149919488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149916780..149919549-chr1:149921905..149924910,3	MCF-7	breast:
2	chr1:149911144..149914271-chr1:149919148..149922451,3	K562	blood:
3	chr1:149916193..149918470-chr1:149919311..149921595,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1556934	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs15916	0.83[AMR][1000 genomes]
rs16832989	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832993	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833048	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836857	1.00[AMR][1000 genomes]
rs16837054	1.00[AMR][1000 genomes]
rs16837367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16837593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16838449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16838646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16841141	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16841623	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16841697	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56929499	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57020352	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57182882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57513077	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58100431	1.00[AMR][1000 genomes]
rs58137104	0.83[AMR][1000 genomes]
rs58688107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58777569	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59462540	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59709800	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59934949	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60631776	1.00[AMR][1000 genomes]
rs6664973	1.00[AMR][1000 genomes]
rs6680574	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694482	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6700399	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73004328	1.00[AMR][1000 genomes]
rs73004398	1.00[AMR][1000 genomes]
rs73004400	1.00[AMR][1000 genomes]
rs73006303	1.00[AMR][1000 genomes]
rs73006306	1.00[AMR][1000 genomes]
rs73006313	1.00[AMR][1000 genomes]
rs73006316	1.00[AMR][1000 genomes]
rs73006318	1.00[AMR][1000 genomes]
rs73006327	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73008167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73008171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73008191	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73008199	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73008201	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010104	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010183	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010186	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010189	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011904	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011906	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011909	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011910	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011912	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011913	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011915	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011930	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73016112	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523560	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7543861	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432820	chr1:148921404-149920927	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	784 gene(s)	inside rSNPs	diseases
2	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149909400-149947000	Weak transcription	Fetal Brain Male	brain
2	chr1:149910000-149934200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:149910200-149929800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:149911400-149933800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:149912200-149920400	Weak transcription	NHDF-Ad	bronchial
6	chr1:149912200-149920600	Weak transcription	Small Intestine	intestine
7	chr1:149912600-149941600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:149912800-149920600	Weak transcription	K562	blood
9	chr1:149912800-149933800	Weak transcription	Stomach Mucosa	stomach
10	chr1:149914400-149937400	Weak transcription	Fetal Heart	heart
11	chr1:149914800-149922200	Strong transcription	Fetal Stomach	stomach
12	chr1:149914800-149922400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:149914800-149922400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:149914800-149922400	Strong transcription	HSMMtube	muscle
15	chr1:149914800-149922600	Strong transcription	Fetal Muscle Trunk	muscle
16	chr1:149914800-149924600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:149915000-149922600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:149915000-149922600	Strong transcription	Placenta	Placenta
19	chr1:149915000-149922800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:149915000-149923600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:149915000-149937600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr1:149915200-149922400	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:149915200-149922600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:149915200-149923600	Strong transcription	Liver	Liver
25	chr1:149915400-149921800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:149915400-149922200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:149915400-149922400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:149915400-149922400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:149915400-149922600	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr1:149915400-149922600	Strong transcription	Fetal Muscle Leg	muscle
31	chr1:149915400-149922600	Strong transcription	Stomach Smooth Muscle	stomach
32	chr1:149915400-149923400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr1:149915400-149923400	Strong transcription	Fetal Intestine Small	intestine
34	chr1:149915600-149919600	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr1:149915600-149922200	Strong transcription	Gastric	stomach
36	chr1:149915600-149922400	Strong transcription	Fetal Intestine Large	intestine
37	chr1:149915600-149922400	Strong transcription	Placenta Amnion	Placenta Amnion
38	chr1:149915600-149922600	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr1:149915600-149922600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:149915600-149922600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:149915600-149922600	Strong transcription	Adipose Nuclei	Adipose
42	chr1:149915600-149923600	Strong transcription	Duodenum Mucosa	Duodenum
43	chr1:149915600-149923600	Strong transcription	Left Ventricle	heart
44	chr1:149915600-149923800	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr1:149915600-149924000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr1:149915800-149922000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr1:149915800-149922200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:149915800-149922200	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr1:149915800-149922400	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr1:149915800-149922400	Strong transcription	Rectal Mucosa Donor 29	rectum

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