The 2.0 version of rSNPBase

Variant report

Variant rs6680574
Chromosome Location chr1:149929652-149929653
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149909400-149947000 Weak transcription Fetal Brain Male brain
2 chr1:149910000-149934200 Weak transcription Primary T cells from cord blood blood
3 chr1:149910200-149929800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr1:149911400-149933800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr1:149912600-149941600 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:149912800-149933800 Weak transcription Stomach Mucosa stomach
7 chr1:149914400-149937400 Weak transcription Fetal Heart heart
8 chr1:149915000-149937600 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr1:149917200-149931400 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr1:149919800-149930000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:149919800-149930000 Weak transcription Hela-S3 cervix
12 chr1:149921000-149929800 Weak transcription Muscle Satellite Cultured Cells --
13 chr1:149921200-149942600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr1:149922200-149929800 Weak transcription Aorta Aorta
15 chr1:149922200-149930200 Weak transcription HepG2 liver
16 chr1:149922200-149930600 Weak transcription NHEK skin
17 chr1:149922200-149935800 Weak transcription Pancreas Pancrea
18 chr1:149922200-149936000 Weak transcription Thymus Thymus
19 chr1:149922200-149937400 Weak transcription Colonic Mucosa Colon
20 chr1:149922200-149937600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr1:149922400-149929800 Weak transcription Brain Cingulate Gyrus brain
22 chr1:149922400-149929800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr1:149922400-149929800 Weak transcription GM12878-XiMat blood
24 chr1:149922400-149929800 Weak transcription HSMMtube muscle
25 chr1:149922400-149930000 Weak transcription A549 lung
26 chr1:149922400-149931200 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr1:149922400-149931400 Weak transcription NHLF lung
28 chr1:149922400-149934400 Weak transcription Psoas Muscle Psoas
29 chr1:149922400-149951600 Weak transcription Small Intestine intestine
30 chr1:149922600-149929800 Weak transcription HSMM muscle
31 chr1:149922600-149929800 Weak transcription K562 blood
32 chr1:149922600-149929800 Weak transcription NH-A brain
33 chr1:149922600-149930600 Weak transcription NHDF-Ad bronchial
34 chr1:149922600-149931200 Weak transcription HMEC breast
35 chr1:149927400-149934000 Weak transcription Primary T helper naive cells from peripheral blood blood
36 chr1:149928200-149929800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:149928200-149934400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr1:149928400-149932200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:149928400-149933800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:149928400-149934200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:149928400-149934200 Strong transcription Adipose Nuclei Adipose
42 chr1:149928800-149930800 ZNF genes & repeats ES-I3 Cell Line embryonic stem cell
43 chr1:149928800-149932000 Strong transcription Stomach Smooth Muscle stomach
44 chr1:149929000-149929800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:149929000-149932000 Strong transcription Breast Myoepithelial Primary Cells Breast
46 chr1:149929000-149934200 Strong transcription Fetal Adrenal Gland Adrenal Gland
47 chr1:149929200-149930400 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr1:149929200-149930400 ZNF genes & repeats Fetal Stomach stomach
49 chr1:149929200-149930800 ZNF genes & repeats Fetal Intestine Small intestine
50 chr1:149929200-149931800 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015