Variant report

Variant	rs1207169
Chromosome Location	chr6:71837333-71837334
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:71837194-71837483	ECC-1	luminal epithelium:	n/a	n/a
2	SETDB1	chr6:71836766-71837594	U2OS	brain:	n/a	n/a
3	CEBPB	chr6:71837131-71837515	Hela-S3	cervix:	n/a	n/a
4	KAP1	chr6:71836850-71837666	HEK293	kidney:	n/a	n/a
5	CEBPB	chr6:71837149-71837505	K562	blood:	n/a	n/a
6	CEBPB	chr6:71837152-71837507	IMR90	lung:	n/a	n/a
7	FOS	chr6:71837252-71837365	MCF10A-Er-Src	breast:	n/a	n/a
8	CEBPB	chr6:71837166-71837509	K562	blood:	n/a	n/a
9	KAP1	chr6:71836785-71837631	U2OS	brain:	n/a	n/a
10	CEBPB	chr6:71837149-71837506	ECC-1	luminal epithelium:	n/a	n/a
11	CEBPB	chr6:71837141-71837513	HepG2	liver:	n/a	n/a
12	CEBPB	chr6:71837142-71837521	A549	lung:	n/a	n/a
13	CEBPB	chr6:71837152-71837517	H1-hESC	embryonic stem cell:	n/a	n/a
14	CEBPB	chr6:71837080-71837486	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000221345	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10806642	0.80[AFR][1000 genomes]
rs10945283	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10945284	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10945285	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12179491	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12179840	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1739800	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1739801	0.84[AFR][1000 genomes]
rs1739805	0.80[AFR][1000 genomes]
rs1775547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775549	0.85[AFR][1000 genomes]
rs1832948	0.98[AFR][1000 genomes]
rs1832949	0.98[AFR][1000 genomes]
rs1857222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857223	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857224	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935799	0.80[AFR][1000 genomes]
rs1935807	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935808	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935809	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935810	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096216	0.93[AFR][1000 genomes]
rs2096217	0.93[AFR][1000 genomes]
rs2105358	0.92[AFR][1000 genomes]
rs57347513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455408	0.80[AFR][1000 genomes]
rs6455409	0.80[AFR][1000 genomes]
rs6899697	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929291	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342811	0.80[AFR][1000 genomes]
rs9346437	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351802	0.80[AFR][1000 genomes]
rs9446342	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9455335	0.95[AFR][1000 genomes]
rs9455336	0.98[AFR][1000 genomes]
rs9455348	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71834600-71848800	Weak transcription	NH-A	brain
2	chr6:71837000-71837600	Enhancers	Primary neutrophils fromperipheralblood	blood

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