Variant report

Variant	rs12073468
Chromosome Location	chr1:225566546-225566547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10915818	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10915821	0.90[EUR][1000 genomes]
rs12081971	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6426066	0.90[EUR][1000 genomes]
rs6426067	0.90[EUR][1000 genomes]
rs6656932	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6663101	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225563400-225566600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:225564400-225577600	Weak transcription	Fetal Intestine Small	intestine
3	chr1:225565800-225566800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:225565800-225567200	Enhancers	NHEK	skin
5	chr1:225565800-225568000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:225565800-225568200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:225565800-225568200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:225566000-225567200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:225566000-225567200	Enhancers	HMEC	breast
10	chr1:225566000-225567400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr1:225566000-225567800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:225566000-225568200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:225566200-225566600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:225566200-225567000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:225566200-225567000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:225566400-225567000	Enhancers	Placenta	Placenta
17	chr1:225566400-225567600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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