Variant report

Variant	rs6426066
Chromosome Location	chr1:225583867-225583868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225581961..225584315-chr1:225585315..225587965,5	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10915818	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10915821	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073468	0.90[EUR][1000 genomes]
rs12081971	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2153577	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6426067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6656932	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6663101	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7406	0.80[AMR][1000 genomes]
rs9783086	0.82[AMR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225567000-225585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:225567200-225585000	Weak transcription	NHEK	skin
3	chr1:225568200-225585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:225568200-225595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:225569400-225585000	Weak transcription	Pancreas	Pancrea
6	chr1:225570400-225587600	Weak transcription	Spleen	Spleen
7	chr1:225570800-225600000	Weak transcription	HSMMtube	muscle
8	chr1:225571400-225585000	Weak transcription	Gastric	stomach
9	chr1:225574800-225584000	Weak transcription	Primary T cells from cord blood	blood
10	chr1:225575600-225588200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:225576200-225585000	Weak transcription	Fetal Stomach	stomach
12	chr1:225576200-225585200	Weak transcription	Osteobl	bone
13	chr1:225576200-225594400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:225576400-225585000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:225576400-225586000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:225576400-225586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:225576600-225588600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:225576800-225585000	Weak transcription	Lung	lung
19	chr1:225577800-225585000	Weak transcription	Esophagus	oesophagus
20	chr1:225577800-225585200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr1:225578000-225585000	Weak transcription	Adipose Nuclei	Adipose
22	chr1:225578000-225588600	Weak transcription	Fetal Kidney	kidney
23	chr1:225578000-225597800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:225578000-225599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:225578200-225584800	Weak transcription	Fetal Intestine Small	intestine
26	chr1:225578400-225588200	Weak transcription	Right Ventricle	heart
27	chr1:225578600-225588200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:225579800-225585000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:225580800-225585000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:225580800-225599200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:225581000-225585000	Weak transcription	Left Ventricle	heart
32	chr1:225581000-225585200	Weak transcription	Liver	Liver
33	chr1:225581200-225585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr1:225581400-225592600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr1:225581600-225584000	Weak transcription	K562	blood
36	chr1:225581600-225596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr1:225581800-225584000	Weak transcription	HSMM	muscle
38	chr1:225581800-225584800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr1:225581800-225585000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:225581800-225585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:225581800-225585800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr1:225581800-225590800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr1:225582000-225584800	Weak transcription	Dnd41	blood
44	chr1:225582000-225585000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:225582000-225585000	Weak transcription	Brain Germinal Matrix	brain
46	chr1:225582000-225585200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:225582000-225585200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr1:225582000-225585200	Weak transcription	Fetal Muscle Leg	muscle
49	chr1:225582000-225585800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr1:225582000-225586000	Weak transcription	Ovary	ovary

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