The 2.0 version of rSNPBase

Variant report

Variant rs2153577
Chromosome Location chr1:225582505-225582506
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225567000-225583400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
2 chr1:225567000-225585000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr1:225567200-225585000 Weak transcription NHEK skin
4 chr1:225568200-225583200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr1:225568200-225585000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr1:225568200-225595800 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr1:225569400-225585000 Weak transcription Pancreas Pancrea
8 chr1:225570400-225587600 Weak transcription Spleen Spleen
9 chr1:225570800-225600000 Weak transcription HSMMtube muscle
10 chr1:225571400-225583400 Weak transcription Aorta Aorta
11 chr1:225571400-225585000 Weak transcription Gastric stomach
12 chr1:225574800-225584000 Weak transcription Primary T cells from cord blood blood
13 chr1:225575600-225588200 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr1:225576000-225583600 Weak transcription Primary hematopoietic stem cells blood
15 chr1:225576200-225583800 Weak transcription Primary B cells from cord blood blood
16 chr1:225576200-225585000 Weak transcription Fetal Stomach stomach
17 chr1:225576200-225585200 Weak transcription Osteobl bone
18 chr1:225576200-225594400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr1:225576400-225583400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr1:225576400-225583600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr1:225576400-225585000 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr1:225576400-225586000 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr1:225576400-225586000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:225576600-225588600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr1:225576800-225583800 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:225576800-225585000 Weak transcription Lung lung
27 chr1:225577800-225582600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:225577800-225583400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
29 chr1:225577800-225585000 Weak transcription Esophagus oesophagus
30 chr1:225577800-225585200 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr1:225578000-225583400 Weak transcription Rectal Smooth Muscle rectum
32 chr1:225578000-225585000 Weak transcription Adipose Nuclei Adipose
33 chr1:225578000-225588600 Weak transcription Fetal Kidney kidney
34 chr1:225578000-225597800 Weak transcription Brain Cingulate Gyrus brain
35 chr1:225578000-225599200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
36 chr1:225578200-225583400 Weak transcription Thymus Thymus
37 chr1:225578200-225584800 Weak transcription Fetal Intestine Small intestine
38 chr1:225578400-225588200 Weak transcription Right Ventricle heart
39 chr1:225578600-225588200 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr1:225578800-225583400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:225579200-225583200 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr1:225579800-225583400 Weak transcription Colon Smooth Muscle Colon
43 chr1:225579800-225585000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:225580200-225583400 Weak transcription Fetal Brain Female brain
45 chr1:225580200-225583400 Weak transcription Stomach Smooth Muscle stomach
46 chr1:225580800-225585000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr1:225580800-225599200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
48 chr1:225581000-225585000 Weak transcription Left Ventricle heart
49 chr1:225581000-225585200 Weak transcription Liver Liver
50 chr1:225581200-225585000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015