Variant report

Variant	rs1207424
Chromosome Location	chr2:206155500-206155501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1207411	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1207415	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1207420	0.87[ASN][1000 genomes]
rs1207421	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1207426	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1207428	0.92[ASN][1000 genomes]
rs1207429	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1207430	0.96[ASN][1000 genomes]
rs1207431	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1207432	0.96[ASN][1000 genomes]
rs1207433	0.96[ASN][1000 genomes]
rs1207434	0.90[ASN][1000 genomes]
rs1207435	0.88[ASN][1000 genomes]
rs1207436	0.88[ASN][1000 genomes]
rs1207437	0.88[ASN][1000 genomes]
rs1207438	0.88[ASN][1000 genomes]
rs1207440	0.87[ASN][1000 genomes]
rs1207441	0.87[ASN][1000 genomes]
rs1211319	0.96[ASN][1000 genomes]
rs1212609	0.88[ASN][1000 genomes]
rs13015412	0.81[ASN][1000 genomes]
rs13024952	0.88[ASN][1000 genomes]
rs1540369	0.81[ASN][1000 genomes]
rs1861510	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1861511	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1861513	0.81[ASN][1000 genomes]
rs2160453	0.90[ASN][1000 genomes]
rs2251539	0.96[ASN][1000 genomes]
rs2541148	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2541149	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2541150	0.82[ASN][1000 genomes]
rs2541151	0.88[ASN][1000 genomes]
rs2541152	0.88[ASN][1000 genomes]
rs2541153	0.88[ASN][1000 genomes]
rs2541154	0.88[ASN][1000 genomes]
rs2541160	0.81[ASN][1000 genomes]
rs2668144	0.81[ASN][1000 genomes]
rs2668145	0.81[ASN][1000 genomes]
rs2668146	0.81[ASN][1000 genomes]
rs2668148	0.83[ASN][1000 genomes]
rs2704638	0.88[ASN][1000 genomes]
rs2704643	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2704644	0.88[ASN][1000 genomes]
rs2878692	0.96[ASN][1000 genomes]
rs35550118	0.81[ASN][1000 genomes]
rs4673317	0.87[ASN][1000 genomes]
rs4675512	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62171496	0.88[ASN][1000 genomes]
rs849189	0.88[ASN][1000 genomes]
rs849193	0.90[ASN][1000 genomes]
rs849194	0.88[ASN][1000 genomes]
rs849198	0.81[ASN][1000 genomes]
rs849200	0.81[ASN][1000 genomes]
rs849207	0.81[ASN][1000 genomes]
rs849208	0.80[ASN][1000 genomes]
rs849216	0.87[ASN][1000 genomes]
rs849218	0.88[ASN][1000 genomes]
rs849219	0.88[ASN][1000 genomes]
rs849220	0.88[ASN][1000 genomes]
rs849221	0.88[ASN][1000 genomes]
rs849222	0.88[ASN][1000 genomes]
rs849223	0.88[ASN][1000 genomes]
rs849224	0.83[ASN][1000 genomes]
rs849250	0.86[ASN][1000 genomes]
rs907462	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206097200-206170600	Weak transcription	HSMMtube	muscle
2	chr2:206118200-206156600	Weak transcription	Aorta	Aorta
3	chr2:206138800-206162200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:206149000-206156800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:206149400-206158200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:206149400-206160000	Weak transcription	Psoas Muscle	Psoas
7	chr2:206149600-206158200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:206153000-206165800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:206154200-206155800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:206154200-206168200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:206154600-206156000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:206154600-206165800	Weak transcription	Ovary	ovary
13	chr2:206154800-206155800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr2:206155200-206158200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:206155400-206156200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr2:206155400-206158400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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