Variant report

Variant	rs2541150
Chromosome Location	chr2:206193409-206193410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10804147	0.81[ASN][1000 genomes]
rs10932104	0.81[ASN][1000 genomes]
rs10932105	0.81[ASN][1000 genomes]
rs10932106	0.81[ASN][1000 genomes]
rs11677457	0.81[ASN][1000 genomes]
rs11690480	0.81[ASN][1000 genomes]
rs11690561	0.81[ASN][1000 genomes]
rs11691345	0.83[ASN][1000 genomes]
rs11695465	0.81[ASN][1000 genomes]
rs1207411	0.85[ASN][1000 genomes]
rs1207415	0.86[ASN][1000 genomes]
rs1207421	0.84[ASN][1000 genomes]
rs1207424	0.82[ASN][1000 genomes]
rs1207426	0.86[ASN][1000 genomes]
rs1207428	0.83[ASN][1000 genomes]
rs1207429	0.84[ASN][1000 genomes]
rs1207430	0.86[ASN][1000 genomes]
rs1207431	0.86[ASN][1000 genomes]
rs1207432	0.86[ASN][1000 genomes]
rs1207433	0.86[ASN][1000 genomes]
rs1207434	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1207435	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1207436	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1207437	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1207438	0.93[ASN][1000 genomes]
rs1207440	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1207441	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1211319	0.86[ASN][1000 genomes]
rs12468755	0.83[ASN][1000 genomes]
rs12468794	0.83[ASN][1000 genomes]
rs12470434	0.83[ASN][1000 genomes]
rs12476682	0.81[ASN][1000 genomes]
rs12623757	0.81[ASN][1000 genomes]
rs12989507	0.81[ASN][1000 genomes]
rs13004164	0.83[ASN][1000 genomes]
rs13009974	0.81[ASN][1000 genomes]
rs13011880	0.81[ASN][1000 genomes]
rs13011981	0.81[ASN][1000 genomes]
rs13015412	0.85[ASN][1000 genomes]
rs13024952	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1511873	0.81[ASN][1000 genomes]
rs1511874	0.81[ASN][1000 genomes]
rs1606238	0.81[ASN][1000 genomes]
rs1606239	0.81[ASN][1000 genomes]
rs17201041	0.81[ASN][1000 genomes]
rs1861513	0.86[ASN][1000 genomes]
rs1861514	0.81[ASN][1000 genomes]
rs1912845	0.81[ASN][1000 genomes]
rs1990667	0.83[ASN][1000 genomes]
rs2041877	0.81[ASN][1000 genomes]
rs2080418	0.81[ASN][1000 genomes]
rs2080419	0.81[ASN][1000 genomes]
rs2160455	0.83[ASN][1000 genomes]
rs2193077	0.84[ASN][1000 genomes]
rs2251539	0.86[ASN][1000 genomes]
rs2541149	0.83[ASN][1000 genomes]
rs2541151	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2541152	0.93[ASN][1000 genomes]
rs2541153	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2541154	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2541160	0.86[ASN][1000 genomes]
rs2668144	0.86[ASN][1000 genomes]
rs2668145	0.86[ASN][1000 genomes]
rs2668146	0.86[ASN][1000 genomes]
rs2668148	0.87[ASN][1000 genomes]
rs2704642	0.82[ASN][1000 genomes]
rs2704643	0.86[ASN][1000 genomes]
rs2704644	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2878692	0.86[ASN][1000 genomes]
rs35550118	0.85[ASN][1000 genomes]
rs3843339	0.83[ASN][1000 genomes]
rs3845806	0.83[ASN][1000 genomes]
rs3928642	0.83[ASN][1000 genomes]
rs4505506	0.81[ASN][1000 genomes]
rs4673319	0.83[ASN][1000 genomes]
rs4673320	0.81[ASN][1000 genomes]
rs4673323	0.81[ASN][1000 genomes]
rs4673324	0.81[ASN][1000 genomes]
rs4675512	0.90[ASN][1000 genomes]
rs4675515	0.83[ASN][1000 genomes]
rs4675519	0.81[ASN][1000 genomes]
rs62171496	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62171506	0.81[ASN][1000 genomes]
rs6755865	0.80[ASN][1000 genomes]
rs6761373	0.83[ASN][1000 genomes]
rs7582340	0.88[ASN][1000 genomes]
rs849189	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs849193	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs849194	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs849198	0.86[ASN][1000 genomes]
rs849200	0.86[ASN][1000 genomes]
rs849207	0.86[ASN][1000 genomes]
rs849208	0.84[ASN][1000 genomes]
rs849216	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs849218	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs849219	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs849220	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs849221	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs849222	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs849223	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs849224	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs849250	0.90[ASN][1000 genomes]
rs907462	0.85[ASN][1000 genomes]
rs979187	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206186800-206217400	Weak transcription	HSMM	muscle
2	chr2:206188800-206199800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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