Variant report

Variant	rs12074808
Chromosome Location	chr1:102072102-102072103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10493957	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493958	1.00[EUR][1000 genomes]
rs11164238	1.00[EUR][1000 genomes]
rs11164239	1.00[EUR][1000 genomes]
rs11164241	1.00[EUR][1000 genomes]
rs11164243	1.00[EUR][1000 genomes]
rs11164244	1.00[EUR][1000 genomes]
rs11164245	1.00[EUR][1000 genomes]
rs11164247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164250	0.94[EUR][1000 genomes]
rs11164251	0.94[EUR][1000 genomes]
rs11164252	0.94[EUR][1000 genomes]
rs11488027	1.00[EUR][1000 genomes]
rs12068247	1.00[EUR][1000 genomes]
rs12068329	1.00[EUR][1000 genomes]
rs12073459	1.00[EUR][1000 genomes]
rs12073466	1.00[EUR][1000 genomes]
rs12074035	1.00[EUR][1000 genomes]
rs12078720	1.00[EUR][1000 genomes]
rs12078847	1.00[EUR][1000 genomes]
rs12079908	1.00[EUR][1000 genomes]
rs12080001	1.00[EUR][1000 genomes]
rs12083840	0.94[EUR][1000 genomes]
rs12088445	1.00[EUR][1000 genomes]
rs12088450	1.00[EUR][1000 genomes]
rs12094579	1.00[EUR][1000 genomes]
rs12724739	1.00[EUR][1000 genomes]
rs12728472	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12729855	0.97[EUR][1000 genomes]
rs12743322	1.00[EUR][1000 genomes]
rs1484295	1.00[EUR][1000 genomes]
rs1484296	1.00[EUR][1000 genomes]
rs1484303	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125096	1.00[EUR][1000 genomes]
rs17125156	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125161	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28772944	1.00[EUR][1000 genomes]
rs28786227	1.00[EUR][1000 genomes]
rs28789110	0.94[EUR][1000 genomes]
rs28790366	1.00[EUR][1000 genomes]
rs28822436	1.00[EUR][1000 genomes]
rs28893919	1.00[EUR][1000 genomes]
rs34065209	0.97[EUR][1000 genomes]
rs35090231	0.92[ASN][1000 genomes]
rs35628451	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35681286	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55661599	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55994851	0.91[EUR][1000 genomes]
rs66943779	1.00[EUR][1000 genomes]
rs67789472	1.00[EUR][1000 genomes]
rs72978678	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830848	chr1:101930303-102114220	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3427858	chr1:102071506-102072102	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102070800-102072200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:102070800-102072600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:102071000-102072800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:102071000-102072800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:102072000-102072400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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