Variant report

Variant	rs11164251
Chromosome Location	chr1:102079420-102079421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10493957	0.91[EUR][1000 genomes]
rs10493958	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164233	0.92[ASN][1000 genomes]
rs11164238	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164239	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164241	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164242	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11164243	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164244	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164245	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164247	0.94[EUR][1000 genomes]
rs11164250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11488027	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12068247	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12068329	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073459	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073466	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074035	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074162	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12074808	0.94[EUR][1000 genomes]
rs12078720	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078847	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079908	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12080001	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12083840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088445	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088450	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12094579	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12724739	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12728472	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12729855	0.91[EUR][1000 genomes]
rs12743322	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1484295	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1484296	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1484303	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1552290	0.96[ASN][1000 genomes]
rs17125096	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125156	0.85[EUR][1000 genomes]
rs17125161	0.85[EUR][1000 genomes]
rs1843112	0.84[ASN][1000 genomes]
rs28772944	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28786227	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28789110	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28790366	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28822436	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28893919	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34065209	0.91[EUR][1000 genomes]
rs35628451	0.91[EUR][1000 genomes]
rs35681286	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55661599	0.85[EUR][1000 genomes]
rs55994851	0.85[EUR][1000 genomes]
rs56173817	0.84[ASN][1000 genomes]
rs66943779	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67789472	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72978678	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830848	chr1:101930303-102114220	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11164251	HSPA6	trans	brain	seeQTL
rs11164251	DHDH	trans	brain	seeQTL
rs11164251	ATF7IP2	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102078800-102079800	Enhancers	HUVEC	blood vessel

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