Variant report

Variant	rs56173817
Chromosome Location	chr1:102125450-102125451
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:102116557..102119027-chr1:102123747..102125780,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10493958	0.84[ASN][1000 genomes]
rs11164238	0.84[ASN][1000 genomes]
rs11164239	0.84[ASN][1000 genomes]
rs11164241	0.84[ASN][1000 genomes]
rs11164242	0.88[ASN][1000 genomes]
rs11164243	0.84[ASN][1000 genomes]
rs11164244	0.84[ASN][1000 genomes]
rs11164245	0.84[ASN][1000 genomes]
rs11164250	0.84[ASN][1000 genomes]
rs11164251	0.84[ASN][1000 genomes]
rs11164252	0.84[ASN][1000 genomes]
rs11488027	0.84[ASN][1000 genomes]
rs11800181	0.81[EUR][1000 genomes]
rs12062568	0.81[EUR][1000 genomes]
rs12062937	0.81[EUR][1000 genomes]
rs12068247	0.84[ASN][1000 genomes]
rs12068329	0.84[ASN][1000 genomes]
rs12073459	0.84[ASN][1000 genomes]
rs12073466	0.84[ASN][1000 genomes]
rs12074035	0.84[ASN][1000 genomes]
rs12074162	0.88[ASN][1000 genomes]
rs12078720	0.84[ASN][1000 genomes]
rs12078847	0.84[ASN][1000 genomes]
rs12079191	0.81[EUR][1000 genomes]
rs12079908	0.84[ASN][1000 genomes]
rs12080001	0.84[ASN][1000 genomes]
rs12083840	0.84[ASN][1000 genomes]
rs12088445	0.84[ASN][1000 genomes]
rs12088450	0.84[ASN][1000 genomes]
rs12094579	0.84[ASN][1000 genomes]
rs12724739	0.84[ASN][1000 genomes]
rs12743322	0.84[ASN][1000 genomes]
rs1484295	0.84[ASN][1000 genomes]
rs1484296	0.84[ASN][1000 genomes]
rs1552290	0.88[ASN][1000 genomes]
rs1601235	0.90[EUR][1000 genomes]
rs17125096	0.84[ASN][1000 genomes]
rs1843112	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2086852	0.84[EUR][1000 genomes]
rs28772944	0.84[ASN][1000 genomes]
rs28786227	0.84[ASN][1000 genomes]
rs28789110	0.84[ASN][1000 genomes]
rs28790366	0.84[ASN][1000 genomes]
rs28822436	0.84[ASN][1000 genomes]
rs28893919	0.84[ASN][1000 genomes]
rs4907950	0.87[EUR][1000 genomes]
rs4907951	0.84[ASN][1000 genomes]
rs56064810	0.87[EUR][1000 genomes]
rs56221742	0.90[EUR][1000 genomes]
rs56807681	0.81[EUR][1000 genomes]
rs57544888	0.81[EUR][1000 genomes]
rs60629450	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6660076	0.81[EUR][1000 genomes]
rs6679807	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66943779	0.84[ASN][1000 genomes]
rs67789472	0.84[ASN][1000 genomes]
rs7537078	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870459	chr1:102112168-102166616	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102122800-102127000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:102123000-102127200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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