Variant report

Variant	rs11164242
Chromosome Location	chr1:102068229-102068230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10493958	0.96[ASN][1000 genomes]
rs11164233	0.88[ASN][1000 genomes]
rs11164238	0.96[ASN][1000 genomes]
rs11164239	0.96[ASN][1000 genomes]
rs11164241	0.96[ASN][1000 genomes]
rs11164243	0.96[ASN][1000 genomes]
rs11164244	0.96[ASN][1000 genomes]
rs11164245	0.96[ASN][1000 genomes]
rs11164250	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11164251	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11164252	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11488027	0.96[ASN][1000 genomes]
rs12068247	0.96[ASN][1000 genomes]
rs12068329	0.96[ASN][1000 genomes]
rs12073459	0.96[ASN][1000 genomes]
rs12073466	0.96[ASN][1000 genomes]
rs12074035	0.96[ASN][1000 genomes]
rs12074162	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078720	0.96[ASN][1000 genomes]
rs12078847	0.96[ASN][1000 genomes]
rs12079908	0.96[ASN][1000 genomes]
rs12080001	0.96[ASN][1000 genomes]
rs12083840	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12088445	0.96[ASN][1000 genomes]
rs12088450	0.96[ASN][1000 genomes]
rs12094579	0.96[ASN][1000 genomes]
rs12724739	0.96[ASN][1000 genomes]
rs12743322	0.96[ASN][1000 genomes]
rs1484295	0.96[ASN][1000 genomes]
rs1484296	0.96[ASN][1000 genomes]
rs1552290	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17125096	0.96[ASN][1000 genomes]
rs1843112	0.88[ASN][1000 genomes]
rs28772944	0.96[ASN][1000 genomes]
rs28786227	0.96[ASN][1000 genomes]
rs28789110	0.96[ASN][1000 genomes]
rs28790366	0.96[ASN][1000 genomes]
rs28822436	0.96[ASN][1000 genomes]
rs28893919	0.96[ASN][1000 genomes]
rs35090231	0.98[EUR][1000 genomes]
rs56173817	0.88[ASN][1000 genomes]
rs66943779	0.96[ASN][1000 genomes]
rs67789472	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830848	chr1:101930303-102114220	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102067000-102070800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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