Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:102118967..102119744-chr1:102285327..102286064,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11800181	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11802784	1.00[ASN][1000 genomes]
rs12062568	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062937	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1601235	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2086852	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907945	1.00[ASN][1000 genomes]
rs4907946	1.00[ASN][1000 genomes]
rs4907948	1.00[ASN][1000 genomes]
rs4907950	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908169	1.00[ASN][1000 genomes]
rs56064810	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56140505	1.00[ASN][1000 genomes]
rs56173817	0.81[EUR][1000 genomes]
rs56221742	0.84[EUR][1000 genomes]
rs57544888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60629450	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679807	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870459	chr1:102112168-102166616	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102118000-102122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:102118800-102121200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:102119000-102119800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:102119000-102119800	Enhancers	HMEC	breast
5	chr1:102119200-102119800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr1:102119200-102119800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:102119200-102120400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:102119600-102119800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr1:102119600-102119800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr1:102119600-102119800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr1:102119600-102119800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr1:102119600-102119800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr1:102119600-102119800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr1:102119600-102120200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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