Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11800181	1.00[ASN][1000 genomes]
rs11802784	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062568	1.00[ASN][1000 genomes]
rs12062937	1.00[ASN][1000 genomes]
rs12079191	1.00[ASN][1000 genomes]
rs1601235	1.00[ASN][1000 genomes]
rs2086852	1.00[ASN][1000 genomes]
rs4907945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907950	1.00[ASN][1000 genomes]
rs4908169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908184	1.00[AFR][1000 genomes]
rs55639021	1.00[AFR][1000 genomes]
rs56064810	1.00[ASN][1000 genomes]
rs56140505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56141470	1.00[AFR][1000 genomes]
rs56360124	1.00[AFR][1000 genomes]
rs56807681	1.00[ASN][1000 genomes]
rs57544888	1.00[ASN][1000 genomes]
rs60629450	1.00[ASN][1000 genomes]
rs6660076	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830848	chr1:101930303-102114220	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3452407	chr1:102096505-102098902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3452408	chr1:102096505-102098902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102097800-102099200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr1:102097800-102099200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr1:102098000-102098200	Enhancers	Fetal Heart	heart
4	chr1:102098000-102098400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:102098000-102098600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:102098000-102098800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:102098000-102099000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:102098000-102099000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:102098000-102099200	Enhancers	HUES48 Cell Line	embryonic stem cell

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