Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11802784	1.00[ASN][1000 genomes]
rs12062568	0.99[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062937	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079191	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1601235	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2086852	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907945	1.00[ASN][1000 genomes]
rs4907946	1.00[ASN][1000 genomes]
rs4907948	1.00[ASN][1000 genomes]
rs4907950	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908169	1.00[ASN][1000 genomes]
rs56064810	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56140505	1.00[ASN][1000 genomes]
rs56173817	0.81[EUR][1000 genomes]
rs56221742	0.84[EUR][1000 genomes]
rs56807681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57544888	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60629450	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660076	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679807	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870459	chr1:102112168-102166616	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102118000-102122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:102118800-102121200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:102119200-102120400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr1:102119600-102120200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:102119800-102120400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:102119800-102120600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:102119800-102120600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:102119800-102120600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:102119800-102121000	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search: