Variant report

Variant	rs56221742
Chromosome Location	chr1:102123337-102123338
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11800181	0.84[EUR][1000 genomes]
rs12062568	0.90[EUR][1000 genomes]
rs12062937	0.90[EUR][1000 genomes]
rs12079191	0.84[EUR][1000 genomes]
rs1601235	1.00[EUR][1000 genomes]
rs2086852	0.87[EUR][1000 genomes]
rs4907950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4907951	0.84[EUR][1000 genomes]
rs56064810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56173817	0.90[EUR][1000 genomes]
rs56807681	0.84[EUR][1000 genomes]
rs57544888	0.84[EUR][1000 genomes]
rs60629450	0.90[EUR][1000 genomes]
rs6660076	0.84[EUR][1000 genomes]
rs6679807	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870459	chr1:102112168-102166616	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102120200-102123600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:102122800-102127000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:102123000-102123600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:102123000-102127200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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