Variant report

Variant	rs11802784
Chromosome Location	chr1:102066183-102066184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11800181	1.00[ASN][1000 genomes]
rs12062568	1.00[ASN][1000 genomes]
rs12062937	1.00[ASN][1000 genomes]
rs12079191	1.00[ASN][1000 genomes]
rs1601235	1.00[ASN][1000 genomes]
rs2086852	1.00[ASN][1000 genomes]
rs4907945	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907946	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907948	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907950	1.00[ASN][1000 genomes]
rs4908169	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56064810	1.00[ASN][1000 genomes]
rs56140505	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56807681	1.00[ASN][1000 genomes]
rs57544888	1.00[ASN][1000 genomes]
rs60629450	1.00[ASN][1000 genomes]
rs6660076	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830848	chr1:101930303-102114220	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102065600-102066200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:102065600-102066400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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