Variant report

Variant	rs1207727
Chromosome Location	chr7:96636865-96636866
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:96629453-96654775	H1-neurons	neurons:	n/a	n/a
2	MAX	chr7:96635287-96636956	HepG2	liver:	n/a	n/a
3	CTBP2	chr7:96635356-96637298	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr7:96634323-96637321	HepG2	liver:	n/a	n/a
5	TAF1	chr7:96635957-96637337	H1-neurons	neurons:	n/a	n/a
6	TAF1	chr7:96636350-96636919	H1-neurons	neurons:	n/a	n/a
7	REST	chr7:96635837-96639884	H1-neurons	neurons:	n/a	chr7:96638441-96638449
8	POLR2A	chr7:96628026-96649797	H1-neurons	neurons:	n/a	n/a
9	REST	chr7:96624507-96656402	H1-neurons	neurons:	n/a	chr7:96626900-96626913 chr7:96628274-96628287 chr7:96653242-96653252 chr7:96638441-96638449 chr7:96644780-96644790 chr7:96627625-96627635 chr7:96628223-96628236 chr7:96655951-96655958 chr7:96625513-96625526 chr7:96635204-96635222 chr7:96634677-96634690 chr7:96628302-96628315 chr7:96652071-96652084 chr7:96650634-96650647 chr7:96628298-96628318 chr7:96628298-96628318
10	SUZ12	chr7:96635469-96637371	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
DLX6-AS1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1114320	1.00[AFR][1000 genomes]
rs1207723	1.00[AFR][1000 genomes]
rs1207734	1.00[AFR][1000 genomes]
rs1207739	1.00[AFR][1000 genomes]
rs1880733	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96625000-96644000	Bivalent/Poised TSS	Fetal Brain Female	brain
2	chr7:96628000-96643200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
3	chr7:96633800-96637000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr7:96634000-96638200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr7:96634400-96637200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr7:96634400-96638200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
7	chr7:96635800-96637000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr7:96635800-96638600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
9	chr7:96636000-96637000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
10	chr7:96636000-96637200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:96636000-96637200	Flanking Active TSS	HepG2	liver
12	chr7:96636200-96637200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:96636200-96637200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:96636400-96637000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
15	chr7:96636400-96637000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr7:96636400-96637000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
17	chr7:96636400-96637200	Bivalent Enhancer	Fetal Intestine Small	intestine
18	chr7:96636400-96638400	Bivalent/Poised TSS	Fetal Brain Male	brain
19	chr7:96636600-96637000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
20	chr7:96636600-96637000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:96636600-96637200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:96636800-96637000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:96636800-96637000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:96636800-96637000	Bivalent Enhancer	Fetal Heart	heart
25	chr7:96636800-96637200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
26	chr7:96636800-96637200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:96636800-96637400	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
28	chr7:96636800-96637400	Bivalent Enhancer	Placenta	Placenta
29	chr7:96636800-96641000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:96636800-96641400	Weak transcription	Osteobl	bone

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