Variant report

Variant	rs1207734
Chromosome Location	chr7:96653104-96653105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1114320	1.00[AFR][1000 genomes]
rs1207723	1.00[AFR][1000 genomes]
rs1207727	1.00[AFR][1000 genomes]
rs1207739	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1880733	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96647000-96655200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
2	chr7:96648000-96654000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:96650000-96654200	Active TSS	Osteobl	bone
4	chr7:96650200-96653200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:96650400-96654200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:96650400-96654400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
7	chr7:96650800-96653600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:96651000-96653200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:96651000-96653400	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr7:96651200-96653200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:96651200-96653200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
12	chr7:96651400-96653200	Bivalent/Poised TSS	Fetal Stomach	stomach
13	chr7:96651400-96653400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:96651400-96654000	Bivalent/Poised TSS	Fetal Brain Female	brain
15	chr7:96651400-96654400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:96651600-96653200	Weak transcription	Right Atrium	heart
17	chr7:96651600-96653400	Weak transcription	Pancreas	Pancrea
18	chr7:96651600-96654400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:96651600-96654400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
20	chr7:96651600-96654400	Bivalent/Poised TSS	Fetal Lung	lung
21	chr7:96651800-96653200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
22	chr7:96652000-96653200	Weak transcription	Gastric	stomach
23	chr7:96652000-96654200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:96652000-96654200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:96652200-96653200	Bivalent/Poised TSS	Placenta	Placenta
26	chr7:96652200-96653400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:96652200-96654600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
28	chr7:96652400-96653200	Active TSS	Ovary	ovary
29	chr7:96652400-96653400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
30	chr7:96652400-96653600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:96652400-96654600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:96652600-96653400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
33	chr7:96652600-96654200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:96652600-96654200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
35	chr7:96652600-96654600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
36	chr7:96652600-96654600	Bivalent/Poised TSS	NHEK	skin
37	chr7:96652800-96653200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
38	chr7:96652800-96653200	Bivalent/Poised TSS	Fetal Brain Male	brain
39	chr7:96652800-96653200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
40	chr7:96652800-96653200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
41	chr7:96652800-96653400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
42	chr7:96652800-96653600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:96652800-96654200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:96652800-96654200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
45	chr7:96652800-96654200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
46	chr7:96652800-96654400	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
47	chr7:96653000-96653200	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
48	chr7:96653000-96653200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:96653000-96653200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:96653000-96653200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum

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