Variant report

Variant	rs1207733
Chromosome Location	chr7:96651406-96651407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1005169	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266441	1.00[JPT][hapmap]
rs1034759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1114319	1.00[ASN][1000 genomes]
rs1724296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1724297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs917046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96645200-96651600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr7:96647000-96655200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
3	chr7:96648000-96654000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:96648400-96652000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:96650000-96651800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr7:96650000-96654200	Active TSS	Osteobl	bone
7	chr7:96650200-96651600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr7:96650200-96651600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
9	chr7:96650200-96651600	Bivalent Enhancer	Brain Angular Gyrus	brain
10	chr7:96650200-96652200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
11	chr7:96650200-96652400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
12	chr7:96650200-96653200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:96650400-96651600	Bivalent Enhancer	Adipose Nuclei	Adipose
14	chr7:96650400-96651600	Bivalent Enhancer	Left Ventricle	heart
15	chr7:96650400-96651600	Bivalent Enhancer	Lung	lung
16	chr7:96650400-96651600	Enhancers	Pancreas	Pancrea
17	chr7:96650400-96651600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
18	chr7:96650400-96652000	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:96650400-96652000	ZNF genes & repeats	Ovary	ovary
20	chr7:96650400-96652200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
21	chr7:96650400-96652200	Bivalent Enhancer	Liver	Liver
22	chr7:96650400-96654200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:96650400-96654400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
24	chr7:96650600-96651600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:96650600-96651600	Bivalent Enhancer	Colon Smooth Muscle	Colon
26	chr7:96650600-96652000	Bivalent Enhancer	Stomach Mucosa	stomach
27	chr7:96650600-96652400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
28	chr7:96650800-96652000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:96650800-96652200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
30	chr7:96650800-96652200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
31	chr7:96650800-96652200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
32	chr7:96650800-96653600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr7:96651000-96651600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:96651000-96651600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:96651000-96651800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
36	chr7:96651000-96651800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
37	chr7:96651000-96652200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
38	chr7:96651000-96652200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr7:96651000-96652200	Flanking Bivalent TSS/Enh	Placenta	Placenta
40	chr7:96651000-96652200	Bivalent Enhancer	Right Ventricle	heart
41	chr7:96651000-96653200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:96651000-96653400	Bivalent Enhancer	Fetal Muscle Leg	muscle
43	chr7:96651200-96651600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
44	chr7:96651200-96651600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:96651200-96652000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr7:96651200-96652200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
47	chr7:96651200-96652800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
48	chr7:96651200-96653200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr7:96651200-96653200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
50	chr7:96651400-96651600	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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