Variant report

Variant	rs1724297
Chromosome Location	chr7:96646834-96646835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:96645445-96647135	HepG2	liver:	n/a	chr7:96645880-96645890
2	POLR2A	chr7:96629453-96654775	H1-neurons	neurons:	n/a	n/a
3	POLR2A	chr7:96645671-96646986	HepG2	liver:	n/a	n/a
4	MAX	chr7:96645327-96647094	HepG2	liver:	n/a	chr7:96645880-96645890
5	GATA2	chr7:96645388-96646979	SH-SY5Y	brain:	n/a	n/a
6	CTBP2	chr7:96645669-96647906	H1-hESC	embryonic stem cell:	n/a	n/a
7	ZNF263	chr7:96644497-96646964	HEK293-T-REx	kidney:	n/a	chr7:96644758-96644767 chr7:96644756-96644777 chr7:96646239-96646248
8	POLR2A	chr7:96646825-96647061	K562	blood:	n/a	n/a
9	SUZ12	chr7:96645469-96648990	H1-hESC	embryonic stem cell:	n/a	n/a
10	REST	chr7:96645097-96647724	H1-neurons	neurons:	n/a	n/a
11	POLR2A	chr7:96645329-96646890	HepG2	liver:	n/a	n/a
12	RCOR1	chr7:96645811-96646838	HepG2	liver:	n/a	n/a
13	TAF1	chr7:96644886-96646956	H1-neurons	neurons:	n/a	n/a
14	POLR2A	chr7:96628026-96649797	H1-neurons	neurons:	n/a	n/a
15	POLR2A	chr7:96645597-96647168	HepG2	liver:	n/a	n/a
16	REST	chr7:96624507-96656402	H1-neurons	neurons:	n/a	chr7:96626900-96626913 chr7:96628274-96628287 chr7:96653242-96653252 chr7:96638441-96638449 chr7:96644780-96644790 chr7:96627625-96627635 chr7:96628223-96628236 chr7:96655951-96655958 chr7:96625513-96625526 chr7:96635204-96635222 chr7:96634677-96634690 chr7:96628302-96628315 chr7:96652071-96652084 chr7:96650634-96650647 chr7:96628298-96628318 chr7:96628298-96628318
17	TAF1	chr7:96645269-96647100	H1-neurons	neurons:	n/a	n/a
18	SUZ12	chr7:96645885-96648969	NT2-D1	testis:	n/a	n/a

Variant related genes	Relation type
DLX6-AS1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1005169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1034759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1114319	1.00[ASN][1000 genomes]
rs1207733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1724296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs917046	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96643200-96647000	Active TSS	Brain Germinal Matrix	brain
2	chr7:96644600-96648200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:96645200-96647800	Flanking Active TSS	Osteobl	bone
4	chr7:96645200-96651600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr7:96645400-96648400	Bivalent Enhancer	Fetal Brain Male	brain
6	chr7:96645600-96647000	Bivalent Enhancer	Lung	lung
7	chr7:96645600-96647400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
8	chr7:96645600-96647400	Bivalent Enhancer	Brain Substantia Nigra	brain
9	chr7:96645600-96647800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:96645600-96647800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
11	chr7:96645600-96647800	Bivalent Enhancer	Fetal Stomach	stomach
12	chr7:96645600-96647800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
13	chr7:96645600-96648200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr7:96645800-96647000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr7:96645800-96647000	Enhancers	Pancreas	Pancrea
16	chr7:96645800-96647400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:96645800-96648200	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr7:96646000-96647000	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
19	chr7:96646000-96647200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
20	chr7:96646200-96647800	Bivalent Enhancer	Psoas Muscle	Psoas
21	chr7:96646400-96647400	Bivalent Enhancer	Spleen	Spleen
22	chr7:96646400-96647600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:96646400-96648000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
24	chr7:96646400-96648000	Bivalent Enhancer	Esophagus	oesophagus
25	chr7:96646600-96647000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:96646600-96647000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:96646600-96647200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
28	chr7:96646600-96647200	Flanking Active TSS	HepG2	liver
29	chr7:96646600-96647400	Bivalent Enhancer	Placenta	Placenta
30	chr7:96646600-96647600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:96646600-96647600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
32	chr7:96646600-96647800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr7:96646600-96648000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr7:96646600-96648000	Bivalent Enhancer	Adipose Nuclei	Adipose
35	chr7:96646600-96648000	Enhancers	Right Atrium	heart
36	chr7:96646600-96648200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr7:96646800-96647000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
38	chr7:96646800-96647000	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
39	chr7:96646800-96647000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
40	chr7:96646800-96647400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
41	chr7:96646800-96647400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
42	chr7:96646800-96647600	Bivalent Enhancer	Brain Hippocampus Middle	brain
43	chr7:96646800-96647800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr7:96646800-96647800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:96646800-96648000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:96646800-96648000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:96646800-96648000	Bivalent Enhancer	Right Ventricle	heart

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