Variant report

Variant	rs12079862
Chromosome Location	chr15:37506198-37506199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1033838	0.81[EUR][1000 genomes]
rs1033839	0.81[EUR][1000 genomes]
rs1033840	0.81[EUR][1000 genomes]
rs1033841	0.81[EUR][1000 genomes]
rs1033842	0.81[EUR][1000 genomes]
rs10489760	0.82[EUR][1000 genomes]
rs10733059	0.87[EUR][1000 genomes]
rs10754243	0.81[EUR][1000 genomes]
rs10800627	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10919556	0.80[EUR][1000 genomes]
rs10919607	0.87[EUR][1000 genomes]
rs10922360	0.81[EUR][1000 genomes]
rs10922362	0.81[EUR][1000 genomes]
rs10922443	0.80[EUR][1000 genomes]
rs12127003	0.81[EUR][1000 genomes]
rs12745556	0.82[EUR][1000 genomes]
rs1339446	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1393499	0.82[EUR][1000 genomes]
rs1393500	0.81[EUR][1000 genomes]
rs155901	0.82[EUR][1000 genomes]
rs155902	0.82[EUR][1000 genomes]
rs155904	0.81[EUR][1000 genomes]
rs155916	0.81[EUR][1000 genomes]
rs1566679	0.81[EUR][1000 genomes]
rs1976437	0.83[EUR][1000 genomes]
rs1976438	0.81[EUR][1000 genomes]
rs2772317	0.80[EUR][1000 genomes]
rs2772318	0.82[EUR][1000 genomes]
rs2902583	0.87[EUR][1000 genomes]
rs471394	0.80[EUR][1000 genomes]
rs472341	0.80[EUR][1000 genomes]
rs472988	0.80[EUR][1000 genomes]
rs473773	0.80[EUR][1000 genomes]
rs475821	0.80[EUR][1000 genomes]
rs475908	0.80[EUR][1000 genomes]
rs476454	0.88[EUR][1000 genomes]
rs476884	0.83[EUR][1000 genomes]
rs477023	0.80[EUR][1000 genomes]
rs477876	0.82[EUR][1000 genomes]
rs478424	0.83[EUR][1000 genomes]
rs478740	0.83[EUR][1000 genomes]
rs478799	0.83[EUR][1000 genomes]
rs480055	0.83[EUR][1000 genomes]
rs480148	0.88[EUR][1000 genomes]
rs481737	0.83[EUR][1000 genomes]
rs482865	0.80[EUR][1000 genomes]
rs486286	0.88[EUR][1000 genomes]
rs487498	0.85[EUR][1000 genomes]
rs488657	0.88[EUR][1000 genomes]
rs494220	0.82[EUR][1000 genomes]
rs494497	0.83[EUR][1000 genomes]
rs501912	0.80[EUR][1000 genomes]
rs502019	0.80[EUR][1000 genomes]
rs502044	0.80[EUR][1000 genomes]
rs504384	0.92[EUR][1000 genomes]
rs507655	0.83[EUR][1000 genomes]
rs509442	0.83[EUR][1000 genomes]
rs513551	0.82[EUR][1000 genomes]
rs515441	0.80[EUR][1000 genomes]
rs515528	0.80[EUR][1000 genomes]
rs516851	0.80[EUR][1000 genomes]
rs521299	0.81[EUR][1000 genomes]
rs523337	0.82[EUR][1000 genomes]
rs524177	0.82[EUR][1000 genomes]
rs534795	0.82[EUR][1000 genomes]
rs534896	0.82[EUR][1000 genomes]
rs537703	0.81[EUR][1000 genomes]
rs540093	0.83[EUR][1000 genomes]
rs541175	0.80[EUR][1000 genomes]
rs544343	0.89[EUR][1000 genomes]
rs545162	0.90[EUR][1000 genomes]
rs551577	0.80[EUR][1000 genomes]
rs554431	0.80[EUR][1000 genomes]
rs554852	0.83[EUR][1000 genomes]
rs557000	0.81[EUR][1000 genomes]
rs560227	0.83[EUR][1000 genomes]
rs560685	0.83[EUR][1000 genomes]
rs562347	0.88[EUR][1000 genomes]
rs563323	0.80[EUR][1000 genomes]
rs563883	0.80[EUR][1000 genomes]
rs563908	0.80[EUR][1000 genomes]
rs564100	0.80[EUR][1000 genomes]
rs564871	0.80[EUR][1000 genomes]
rs565944	0.82[EUR][1000 genomes]
rs570816	0.83[EUR][1000 genomes]
rs571518	0.80[EUR][1000 genomes]
rs571656	0.83[EUR][1000 genomes]
rs571743	0.83[EUR][1000 genomes]
rs572342	0.82[EUR][1000 genomes]
rs573458	0.87[EUR][1000 genomes]
rs574992	0.87[EUR][1000 genomes]
rs575402	0.82[EUR][1000 genomes]
rs575460	0.83[EUR][1000 genomes]
rs576034	0.80[EUR][1000 genomes]
rs576377	0.83[EUR][1000 genomes]
rs577137	0.82[EUR][1000 genomes]
rs579032	0.81[EUR][1000 genomes]
rs579567	0.80[EUR][1000 genomes]
rs581398	0.80[EUR][1000 genomes]
rs61819063	0.91[EUR][1000 genomes]
rs693683	0.82[EUR][1000 genomes]
rs695185	0.82[EUR][1000 genomes]
rs7524197	0.81[EUR][1000 genomes]
rs7532675	0.81[EUR][1000 genomes]
rs7538568	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569200	chr15:37372611-37752901	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv904080	chr15:37455975-37551072	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:37504200-37509200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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