Variant report

Variant	rs12080262
Chromosome Location	chr1:57452488-57452489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11206946	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11206947	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11206948	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11206950	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11206951	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11206952	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11799770	1.00[CEU][hapmap]
rs12073104	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12083616	1.00[CEU][hapmap]
rs12085408	1.00[EUR][1000 genomes]
rs12085412	1.00[EUR][1000 genomes]
rs12087759	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12354123	1.00[EUR][1000 genomes]
rs1411007	1.00[EUR][1000 genomes]
rs17114693	1.00[EUR][1000 genomes]
rs17114752	1.00[EUR][1000 genomes]
rs17114759	1.00[EUR][1000 genomes]
rs17114763	1.00[EUR][1000 genomes]
rs17114769	1.00[EUR][1000 genomes]
rs17114777	1.00[EUR][1000 genomes]
rs17114782	1.00[EUR][1000 genomes]
rs17114926	1.00[EUR][1000 genomes]
rs34671672	1.00[EUR][1000 genomes]
rs56821517	1.00[EUR][1000 genomes]
rs58394001	1.00[EUR][1000 genomes]
rs58615684	1.00[EUR][1000 genomes]
rs59086132	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6656406	1.00[EUR][1000 genomes]
rs6684287	1.00[CEU][hapmap]
rs72903367	1.00[EUR][1000 genomes]
rs72903371	1.00[EUR][1000 genomes]
rs72903380	1.00[EUR][1000 genomes]
rs72903382	1.00[EUR][1000 genomes]
rs74074345	1.00[EUR][1000 genomes]
rs74074380	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74077328	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57440400-57452600	Weak transcription	Liver	Liver
2	chr1:57451400-57452600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:57451800-57452600	Flanking Active TSS	HepG2	liver

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