Variant report

Variant	rs17114693
Chromosome Location	chr1:57436665-57436666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11206946	1.00[EUR][1000 genomes]
rs11206947	1.00[EUR][1000 genomes]
rs11206948	1.00[EUR][1000 genomes]
rs11206950	1.00[EUR][1000 genomes]
rs11206951	1.00[EUR][1000 genomes]
rs11206952	1.00[EUR][1000 genomes]
rs12073104	1.00[EUR][1000 genomes]
rs12080262	1.00[EUR][1000 genomes]
rs12085408	1.00[EUR][1000 genomes]
rs12085412	1.00[EUR][1000 genomes]
rs12087759	1.00[EUR][1000 genomes]
rs12354123	1.00[EUR][1000 genomes]
rs1411007	1.00[EUR][1000 genomes]
rs17114752	1.00[EUR][1000 genomes]
rs17114759	1.00[EUR][1000 genomes]
rs17114763	1.00[EUR][1000 genomes]
rs17114769	1.00[EUR][1000 genomes]
rs17114777	1.00[EUR][1000 genomes]
rs17114782	1.00[EUR][1000 genomes]
rs17114926	1.00[EUR][1000 genomes]
rs34671672	1.00[EUR][1000 genomes]
rs56821517	1.00[EUR][1000 genomes]
rs58394001	1.00[EUR][1000 genomes]
rs58615684	1.00[EUR][1000 genomes]
rs59086132	1.00[EUR][1000 genomes]
rs6656406	1.00[EUR][1000 genomes]
rs72903367	1.00[EUR][1000 genomes]
rs72903371	1.00[EUR][1000 genomes]
rs72903380	1.00[EUR][1000 genomes]
rs72903382	1.00[EUR][1000 genomes]
rs74074345	1.00[EUR][1000 genomes]
rs74074380	1.00[EUR][1000 genomes]
rs74077328	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17114693	TMEM200A	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57434000-57445800	Weak transcription	Pancreas	Pancrea
2	chr1:57435600-57437600	Enhancers	HepG2	liver
3	chr1:57436200-57436800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:57436400-57439800	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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