Variant report

Variant	rs12081029
Chromosome Location	chr1:57792764-57792765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12401342	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404869	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411278	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12725140	0.89[EUR][1000 genomes]
rs12734724	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737167	0.89[EUR][1000 genomes]
rs12737593	1.00[ASN][1000 genomes]
rs12741031	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12743986	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12748450	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12756218	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557223	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17423736	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17423834	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17457585	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34088636	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34339837	1.00[ASN][1000 genomes]
rs34349049	1.00[ASN][1000 genomes]
rs34374446	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34458695	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34475805	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34553708	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34591213	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34600157	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34707135	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34725826	1.00[ASN][1000 genomes]
rs35120429	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35321467	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35335448	0.89[EUR][1000 genomes]
rs35344722	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35349270	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35404211	1.00[ASN][1000 genomes]
rs35511416	1.00[ASN][1000 genomes]
rs3908772	1.00[ASN][1000 genomes]
rs56096668	0.89[EUR][1000 genomes]
rs56156700	1.00[ASN][1000 genomes]
rs58075307	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71642111	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71642113	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71642115	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71642116	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71642117	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71642118	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74074976	1.00[ASN][1000 genomes]
rs74074978	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv871943	chr1:57784144-57855876	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57785200-57793800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57787200-57793800	Weak transcription	Fetal Brain Male	brain
3	chr1:57790400-57793400	Enhancers	Colon Smooth Muscle	Colon
4	chr1:57790800-57792800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:57790800-57793200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:57791200-57792800	Weak transcription	Fetal Brain Female	brain
7	chr1:57791200-57794200	Enhancers	Stomach Smooth Muscle	stomach
8	chr1:57791200-57798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:57792400-57806200	Weak transcription	Fetal Intestine Small	intestine

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