The 2.0 version of rSNPBase

Variant report

Variant rs12081190
Chromosome Location chr1:47842285-47842286
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47800600-47854600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:47801000-47850800 Weak transcription NHEK skin
3 chr1:47814800-47850600 Weak transcription Aorta Aorta
4 chr1:47823000-47846400 Weak transcription Colonic Mucosa Colon
5 chr1:47824000-47851000 Weak transcription Stomach Mucosa stomach
6 chr1:47824000-47853800 Weak transcription Psoas Muscle Psoas
7 chr1:47827800-47854800 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:47832200-47854200 Weak transcription Esophagus oesophagus
9 chr1:47833200-47852000 Weak transcription Placenta Amnion Placenta Amnion
10 chr1:47833400-47844600 Weak transcription iPS-15b Cell Line embryonic stem cell
11 chr1:47833600-47854200 Weak transcription H9 Cell Line embryonic stem cell
12 chr1:47833600-47854200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr1:47833800-47842800 Strong transcription Primary B cells from peripheral blood blood
14 chr1:47834000-47847400 Strong transcription Primary T helper cells fromperipheralblood blood
15 chr1:47834000-47847600 Strong transcription Primary T regulatory cells fromperipheralblood blood
16 chr1:47834000-47847600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr1:47834000-47849200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr1:47834000-47849200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:47834000-47849200 Strong transcription Dnd41 blood
20 chr1:47834000-47849400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:47834200-47842400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr1:47834200-47842400 Strong transcription K562 blood
23 chr1:47834200-47842800 Strong transcription Liver Liver
24 chr1:47834200-47842800 Strong transcription Placenta Placenta
25 chr1:47834200-47843000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr1:47834200-47843000 Strong transcription Primary T cells from cord blood blood
27 chr1:47834200-47843000 Strong transcription Colon Smooth Muscle Colon
28 chr1:47834200-47843000 Strong transcription Fetal Thymus thymus
29 chr1:47834200-47843200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:47834200-47843200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr1:47834200-47843200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr1:47834200-47843200 Strong transcription Skeletal Muscle Female skeletal muscle
33 chr1:47834200-47843200 Strong transcription Osteobl bone
34 chr1:47834200-47843800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:47834200-47847000 Strong transcription Primary T cells fromperipheralblood blood
36 chr1:47834200-47847600 Strong transcription Primary monocytes fromperipheralblood blood
37 chr1:47834200-47847600 Strong transcription Primary T helper cells PMA-I stimulated --
38 chr1:47834200-47848000 Strong transcription HSMM muscle
39 chr1:47834200-47849200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
40 chr1:47834200-47849400 Strong transcription Duodenum Mucosa Duodenum
41 chr1:47834200-47849400 Strong transcription Rectal Mucosa Donor 29 rectum
42 chr1:47834200-47849400 Strong transcription Monocytes-CD14+_RO01746 blood
43 chr1:47834200-47850200 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr1:47835000-47844600 Weak transcription Lung lung
45 chr1:47835000-47846600 Weak transcription Gastric stomach
46 chr1:47835200-47844600 Weak transcription Spleen Spleen
47 chr1:47835200-47844800 Weak transcription H1 Cell Line embryonic stem cell
48 chr1:47835200-47853400 Weak transcription NHLF lung
49 chr1:47835200-47853600 Weak transcription Fetal Brain Male brain
50 chr1:47835400-47849800 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015