The 2.0 version of rSNPBase

Variant report

Variant rs12057442
Chromosome Location chr1:47748564-47748565
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47705200-47766400 Weak transcription Placenta Amnion Placenta Amnion
2 chr1:47705600-47766400 Weak transcription Primary T cells from cord blood blood
3 chr1:47714400-47779200 Weak transcription Small Intestine intestine
4 chr1:47714600-47778400 Weak transcription Fetal Heart heart
5 chr1:47715600-47749200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:47716600-47772600 Strong transcription Dnd41 blood
7 chr1:47720400-47757000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr1:47720600-47766400 Weak transcription Brain Germinal Matrix brain
9 chr1:47721000-47749000 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:47721600-47766800 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr1:47723400-47772400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr1:47728600-47755200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
13 chr1:47729000-47767000 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr1:47730400-47770200 Weak transcription Colonic Mucosa Colon
15 chr1:47730800-47755000 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr1:47730800-47766400 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:47731400-47778000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr1:47735200-47754000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr1:47735400-47779000 Weak transcription Esophagus oesophagus
20 chr1:47738400-47749000 Weak transcription Fetal Stomach stomach
21 chr1:47740400-47757200 Weak transcription Gastric stomach
22 chr1:47741400-47771400 Strong transcription HUES6 Cell Line embryonic stem cell
23 chr1:47741600-47754000 Weak transcription Primary B cells from peripheral blood blood
24 chr1:47741600-47770800 Strong transcription Fetal Thymus thymus
25 chr1:47741800-47748600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr1:47741800-47770800 Strong transcription HUES48 Cell Line embryonic stem cell
27 chr1:47742200-47751000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr1:47742600-47773000 Strong transcription HUES64 Cell Line embryonic stem cell
29 chr1:47742600-47773000 Strong transcription iPS-20b Cell Line embryonic stem cell
30 chr1:47742800-47751600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:47742800-47757000 Strong transcription iPS-18 Cell Line embryonic stem cell
32 chr1:47742800-47763800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr1:47743000-47753600 Strong transcription Monocytes-CD14+_RO01746 blood
34 chr1:47743200-47754000 Strong transcription Primary hematopoietic stem cells short term culture blood
35 chr1:47743800-47766400 Weak transcription Fetal Kidney kidney
36 chr1:47743800-47779200 Weak transcription Brain Hippocampus Middle brain
37 chr1:47744200-47779000 Weak transcription Brain Angular Gyrus brain
38 chr1:47744400-47779000 Weak transcription Brain Inferior Temporal Lobe brain
39 chr1:47744600-47754600 Weak transcription Primary T cells fromperipheralblood blood
40 chr1:47744800-47749400 Strong transcription HSMM muscle
41 chr1:47744800-47750800 Strong transcription GM12878-XiMat blood
42 chr1:47744800-47753000 Strong transcription Primary neutrophils fromperipheralblood blood
43 chr1:47744800-47779000 Weak transcription HSMMtube muscle
44 chr1:47745000-47750400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr1:47745000-47751200 Strong transcription Primary monocytes fromperipheralblood blood
46 chr1:47745000-47751200 Strong transcription HUVEC blood vessel
47 chr1:47745000-47762000 Strong transcription H1 Cell Line embryonic stem cell
48 chr1:47745400-47749600 Strong transcription A549 lung
49 chr1:47745400-47750400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr1:47745600-47749200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015