The 2.0 version of rSNPBase

Variant report

Variant rs7545862
Chromosome Location chr1:47771565-47771566
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:47714400-47779200 Weak transcription Small Intestine intestine
2 chr1:47714600-47778400 Weak transcription Fetal Heart heart
3 chr1:47716600-47772600 Strong transcription Dnd41 blood
4 chr1:47723400-47772400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr1:47731400-47778000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr1:47735400-47779000 Weak transcription Esophagus oesophagus
7 chr1:47742600-47773000 Strong transcription HUES64 Cell Line embryonic stem cell
8 chr1:47742600-47773000 Strong transcription iPS-20b Cell Line embryonic stem cell
9 chr1:47743800-47779200 Weak transcription Brain Hippocampus Middle brain
10 chr1:47744200-47779000 Weak transcription Brain Angular Gyrus brain
11 chr1:47744400-47779000 Weak transcription Brain Inferior Temporal Lobe brain
12 chr1:47744800-47779000 Weak transcription HSMMtube muscle
13 chr1:47746200-47772000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr1:47746200-47778800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:47746600-47772200 Weak transcription Ovary ovary
16 chr1:47746600-47776400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:47746600-47778400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr1:47746600-47778400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr1:47746600-47778400 Weak transcription Fetal Brain Female brain
20 chr1:47746800-47778800 Weak transcription Placenta Placenta
21 chr1:47749600-47777800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr1:47750000-47779200 Weak transcription Right Atrium heart
23 chr1:47755200-47779000 Weak transcription Primary B cells from cord blood blood
24 chr1:47755400-47778800 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr1:47757400-47773000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:47760000-47772600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr1:47763400-47778600 Weak transcription Adipose Nuclei Adipose
28 chr1:47763600-47779000 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr1:47763600-47779200 Weak transcription Fetal Brain Male brain
30 chr1:47764200-47779000 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr1:47764200-47779000 Weak transcription Stomach Mucosa stomach
32 chr1:47764400-47772600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr1:47765000-47772600 Strong transcription H1 Cell Line embryonic stem cell
34 chr1:47765400-47772600 Strong transcription Monocytes-CD14+_RO01746 blood
35 chr1:47765400-47773000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr1:47765400-47777400 Strong transcription Primary hematopoietic stem cells short term culture blood
37 chr1:47765600-47779000 Weak transcription Brain Anterior Caudate brain
38 chr1:47765800-47779200 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr1:47766800-47778400 Weak transcription Fetal Adrenal Gland Adrenal Gland
40 chr1:47767000-47771800 Weak transcription Fetal Intestine Small intestine
41 chr1:47767000-47778800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:47767400-47775200 Weak transcription Muscle Satellite Cultured Cells --
43 chr1:47767400-47778000 Weak transcription NHLF lung
44 chr1:47767400-47778600 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr1:47767400-47778800 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr1:47767400-47779000 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr1:47767800-47772000 Weak transcription iPS-15b Cell Line embryonic stem cell
48 chr1:47767800-47779000 Weak transcription Primary T helper cells PMA-I stimulated --
49 chr1:47768000-47772000 Weak transcription Fetal Muscle Trunk muscle
50 chr1:47768000-47778200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015