Variant report

Variant	rs12081229
Chromosome Location	chr1:56146488-56146489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11206632	0.86[JPT][hapmap]
rs1165479	0.87[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12091574	1.00[ASW][hapmap];0.83[LWK][hapmap]
rs17112591	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs2767511	0.87[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34439887	0.83[AMR][1000 genomes]
rs6669312	0.85[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56135800-56162000	Weak transcription	Aorta	Aorta
2	chr1:56138000-56155600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:56140200-56148000	Weak transcription	Fetal Lung	lung
4	chr1:56145600-56150200	Weak transcription	HSMM	muscle
5	chr1:56146000-56148000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:56146200-56148000	Weak transcription	NHDF-Ad	bronchial
7	chr1:56146200-56151000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:56146400-56149400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:56146400-56150000	Weak transcription	Osteobl	bone
10	chr1:56146400-56155400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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