Variant report

Variant	rs2767511
Chromosome Location	chr1:56157953-56157954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1165479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081229	0.87[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1514140	0.81[CHD][hapmap]
rs2671246	0.87[CHB][hapmap];0.97[CHD][hapmap];0.83[ASN][1000 genomes]
rs2671258	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs2767501	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs2767506	0.97[ASN][1000 genomes]
rs2767512	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs2767517	0.81[CHB][hapmap]
rs2819483	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs34439887	0.82[EUR][1000 genomes]
rs7518530	0.81[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2767511	PEG10	trans	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56135800-56162000	Weak transcription	Aorta	Aorta
2	chr1:56151400-56159200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56153400-56158400	Weak transcription	NHDF-Ad	bronchial
4	chr1:56155800-56160000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:56156200-56159000	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:56156400-56159200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:56156400-56159200	Weak transcription	Fetal Intestine Large	intestine
8	chr1:56156400-56159800	Weak transcription	Osteobl	bone
9	chr1:56156400-56160400	Weak transcription	Spleen	Spleen
10	chr1:56156600-56159000	Weak transcription	Fetal Heart	heart
11	chr1:56156600-56159800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:56156600-56160400	Weak transcription	Adipose Nuclei	Adipose
13	chr1:56156800-56159600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:56156800-56159600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:56157800-56158000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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