Variant report

Variant	rs2819483
Chromosome Location	chr1:56160151-56160152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56149093..56150819-chr1:56158899..56161171,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10888938	0.86[ASN][1000 genomes]
rs1165479	0.81[CHB][hapmap]
rs1514139	0.94[ASN][1000 genomes]
rs1514140	0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2137830	0.89[ASN][1000 genomes]
rs2175861	0.81[ASN][1000 genomes]
rs2671230	0.91[EUR][1000 genomes]
rs2671235	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2671246	0.93[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2671258	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2767501	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2767505	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2767506	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2767511	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs2767512	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819471	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9436523	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56135800-56162000	Weak transcription	Aorta	Aorta
2	chr1:56156400-56160400	Weak transcription	Spleen	Spleen
3	chr1:56156600-56160400	Weak transcription	Adipose Nuclei	Adipose
4	chr1:56158400-56170800	Enhancers	NHDF-Ad	bronchial
5	chr1:56159000-56162800	Enhancers	Fetal Muscle Leg	muscle
6	chr1:56159200-56161200	Enhancers	Fetal Intestine Large	intestine
7	chr1:56159200-56162200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:56159200-56163800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:56159400-56163400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:56159600-56160600	Enhancers	Fetal Intestine Small	intestine
11	chr1:56159600-56161200	Enhancers	Fetal Thymus	thymus
12	chr1:56159600-56161200	Enhancers	Pancreas	Pancrea
13	chr1:56159600-56161400	Enhancers	Placenta	Placenta
14	chr1:56159600-56162800	Enhancers	Psoas Muscle	Psoas
15	chr1:56159600-56163000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:56159600-56163000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr1:56159600-56164000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:56159600-56164000	Enhancers	NHLF	lung
19	chr1:56159600-56166800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:56159800-56161200	Enhancers	Left Ventricle	heart
21	chr1:56159800-56162800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:56159800-56163000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:56159800-56163400	Enhancers	Osteobl	bone
24	chr1:56159800-56164800	Enhancers	Fetal Lung	lung
25	chr1:56160000-56160200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:56160000-56160200	Flanking Active TSS	Fetal Heart	heart
27	chr1:56160000-56160600	Enhancers	Liver	Liver
28	chr1:56160000-56160600	Enhancers	Hela-S3	cervix
29	chr1:56160000-56160800	Enhancers	HSMMtube	muscle
30	chr1:56160000-56161200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr1:56160000-56161200	Enhancers	Ovary	ovary
32	chr1:56160000-56161400	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr1:56160000-56161400	Enhancers	Right Ventricle	heart
34	chr1:56160000-56162000	Enhancers	Colon Smooth Muscle	Colon
35	chr1:56160000-56163000	Enhancers	Muscle Satellite Cultured Cells	--
36	chr1:56160000-56163000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr1:56160000-56163000	Enhancers	NH-A	brain

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