Variant report

Variant	rs2819470
Chromosome Location	chr1:56167503-56167504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10888938	0.86[ASN][1000 genomes]
rs1514139	0.94[ASN][1000 genomes]
rs1514140	0.93[ASN][1000 genomes]
rs2137830	0.89[ASN][1000 genomes]
rs2175861	0.81[ASN][1000 genomes]
rs2671230	0.91[EUR][1000 genomes]
rs2671235	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2671246	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2671258	0.96[ASN][1000 genomes]
rs2767501	0.97[ASN][1000 genomes]
rs2767505	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2767506	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2767512	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767517	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819471	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819483	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518530	0.96[ASN][1000 genomes]
rs9436523	0.94[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56158400-56170800	Enhancers	NHDF-Ad	bronchial
2	chr1:56161400-56169400	Weak transcription	Placenta	Placenta
3	chr1:56162400-56169400	Weak transcription	Ovary	ovary
4	chr1:56164400-56167800	Enhancers	NHLF	lung
5	chr1:56164800-56169000	Weak transcription	Fetal Lung	lung
6	chr1:56165800-56168000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:56166000-56167800	Enhancers	HSMM	muscle
8	chr1:56166200-56167600	Enhancers	Fetal Stomach	stomach
9	chr1:56166400-56169600	Weak transcription	HSMMtube	muscle
10	chr1:56166400-56182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:56166800-56167600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:56166800-56169200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:56166800-56169200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:56166800-56169600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:56167000-56168800	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:56167000-56169200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:56167200-56167800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:56167400-56167600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:56167400-56169200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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