Variant report

Variant	rs2671246
Chromosome Location	chr1:56179704-56179705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1165479	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs1514139	0.84[ASN][1000 genomes]
rs1514140	0.87[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2175861	0.89[ASN][1000 genomes]
rs2671230	0.94[EUR][1000 genomes]
rs2671235	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2671258	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2767501	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2767505	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767506	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2767511	0.87[CHB][hapmap];0.97[CHD][hapmap];0.83[ASN][1000 genomes]
rs2767512	0.93[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2767517	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2819470	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2819471	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2819483	0.93[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7518530	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9436523	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2671246	SURF1	trans	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56166400-56182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:56167800-56181000	Weak transcription	HSMM	muscle
3	chr1:56168000-56180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:56170200-56181000	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:56174000-56186000	Weak transcription	Spleen	Spleen
6	chr1:56174200-56183000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:56177800-56187800	Enhancers	Placenta	Placenta
8	chr1:56178400-56180000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:56178400-56181600	Weak transcription	Fetal Stomach	stomach
10	chr1:56178800-56180000	Weak transcription	NHLF	lung
11	chr1:56178800-56181800	Weak transcription	Fetal Lung	lung
12	chr1:56178800-56183400	Weak transcription	Fetal Kidney	kidney
13	chr1:56179000-56179800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr1:56179200-56181800	Weak transcription	Psoas Muscle	Psoas
15	chr1:56179400-56183800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:56179600-56179800	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links