Variant report

Variant	rs2767517
Chromosome Location	chr1:56164019-56164020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56162766..56164524-chr1:57043600..57045392,2	MCF-7	breast:
2	chr1:56156698..56158897-chr1:56161662..56164222,3	K562	blood:

Variant related genes	Relation type
ENSG00000162407	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10888938	0.86[ASN][1000 genomes]
rs1165479	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1514139	0.94[ASN][1000 genomes]
rs1514140	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2137830	0.89[ASN][1000 genomes]
rs2175861	0.81[ASN][1000 genomes]
rs2671230	0.91[EUR][1000 genomes]
rs2671235	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2671246	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2671258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2767501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2767505	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2767506	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2767511	0.81[CHB][hapmap]
rs2767512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819470	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819471	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9436523	0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56158400-56170800	Enhancers	NHDF-Ad	bronchial
2	chr1:56159600-56166800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56159800-56164800	Enhancers	Fetal Lung	lung
4	chr1:56161400-56165800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:56161400-56169400	Weak transcription	Placenta	Placenta
6	chr1:56161600-56165800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:56162000-56165000	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:56162400-56166000	Weak transcription	HSMM	muscle
9	chr1:56162400-56169400	Weak transcription	Ovary	ovary
10	chr1:56162600-56166200	Weak transcription	HSMMtube	muscle
11	chr1:56162800-56165800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:56162800-56165800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:56163000-56164600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:56163000-56164800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:56163000-56165800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:56163000-56166000	Weak transcription	NH-A	brain
17	chr1:56163400-56165400	Weak transcription	Osteobl	bone
18	chr1:56163400-56166200	Weak transcription	Fetal Stomach	stomach
19	chr1:56163800-56165000	Enhancers	Fetal Kidney	kidney
20	chr1:56163800-56165800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:56164000-56164400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:56164000-56164400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:56164000-56164400	Weak transcription	NHLF	lung

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