Variant report

Variant	rs12081255
Chromosome Location	chr1:220260202-220260203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220258983..220260930-chr1:220282366..220284505,2	K562	blood:
2	chr1:220186134..220187962-chr1:220260106..220262494,2	K562	blood:
3	chr1:220257353..220261155-chr1:220267396..220269085,3	MCF-7	breast:
4	chr1:220258594..220260876-chr1:220261597..220263331,2	K562	blood:

Variant related genes	Relation type
ENSG00000067704	Chromatin interaction
ENSG00000162813	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17007152	0.82[EUR][1000 genomes]
rs61830429	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427930	chr1:220120379-220333434	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	744 gene(s)	inside rSNPs	diseases
2	nsv832636	chr1:220139697-220294352	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	738 gene(s)	inside rSNPs	diseases
3	esv2753619	chr1:220210273-220302117	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	737 gene(s)	inside rSNPs	diseases
4	esv3429180	chr1:220259935-220260350	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220220600-220262400	Weak transcription	Pancreas	Pancrea
2	chr1:220220600-220262400	Weak transcription	NHLF	lung
3	chr1:220220800-220261600	Weak transcription	Fetal Brain Male	brain
4	chr1:220236400-220262800	Weak transcription	Esophagus	oesophagus
5	chr1:220238000-220262800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:220238000-220267400	Weak transcription	Spleen	Spleen
7	chr1:220238200-220262800	Weak transcription	Gastric	stomach
8	chr1:220239400-220262000	Weak transcription	Brain Germinal Matrix	brain
9	chr1:220239600-220261600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:220239600-220262400	Weak transcription	Right Ventricle	heart
11	chr1:220241200-220261800	Weak transcription	A549	lung
12	chr1:220241200-220262000	Weak transcription	HMEC	breast
13	chr1:220241200-220262400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:220241200-220262400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:220241400-220262400	Weak transcription	NHEK	skin
16	chr1:220242600-220262800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:220243800-220262400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr1:220246200-220262000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:220246400-220261600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr1:220246400-220261800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:220246400-220262000	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:220246400-220262400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:220246400-220262400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:220246400-220262400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:220246400-220262400	Weak transcription	Brain Anterior Caudate	brain
26	chr1:220246400-220262400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:220246400-220262400	Weak transcription	Brain Substantia Nigra	brain
28	chr1:220246400-220262400	Weak transcription	Fetal Brain Female	brain
29	chr1:220246600-220262400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr1:220246600-220262400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr1:220246600-220262400	Weak transcription	Colonic Mucosa	Colon
32	chr1:220246800-220262400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr1:220246800-220262400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr1:220246800-220262400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:220246800-220262400	Weak transcription	Fetal Heart	heart
36	chr1:220246800-220262400	Weak transcription	Thymus	Thymus
37	chr1:220247000-220262400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr1:220247000-220262400	Weak transcription	Aorta	Aorta
39	chr1:220247000-220262400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr1:220247000-220262400	Weak transcription	Fetal Muscle Leg	muscle
41	chr1:220247000-220262800	Weak transcription	Lung	lung
42	chr1:220247200-220262400	Weak transcription	Adipose Nuclei	Adipose
43	chr1:220247400-220261800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr1:220247400-220262400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr1:220247400-220262400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr1:220247400-220262400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr1:220247400-220262400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr1:220247400-220262400	Weak transcription	NH-A	brain
49	chr1:220247600-220260800	Weak transcription	Dnd41	blood
50	chr1:220247600-220261600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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