Variant report

Variant	rs12081692
Chromosome Location	chr1:155093326-155093327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155093079..155097838-chr1:155098662..155101099,5	K562	blood:
2	chr1:155049589..155073019-chr1:155085330..155115362,149	MCF-7	breast:
3	chr1:155092552..155095095-chr1:155160179..155163739,4	MCF-7	breast:
4	chr1:155023157..155025347-chr1:155091508..155094393,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143590	Chromatin interaction
ENSG00000185499	Chromatin interaction
ENSG00000169242	Chromatin interaction
ENSG00000143537	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10908457	0.98[EUR][1000 genomes]
rs11264324	1.00[EUR][1000 genomes]
rs11264325	1.00[EUR][1000 genomes]
rs11264326	1.00[EUR][1000 genomes]
rs12126992	0.88[EUR][1000 genomes]
rs13375955	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1462854	0.88[EUR][1000 genomes]
rs28670060	0.88[EUR][1000 genomes]
rs57157364	0.90[EUR][1000 genomes]
rs58925616	0.94[EUR][1000 genomes]
rs66474937	0.98[EUR][1000 genomes]
rs67333363	0.90[EUR][1000 genomes]
rs72702273	0.90[EUR][1000 genomes]
rs72702285	1.00[EUR][1000 genomes]
rs72702288	1.00[EUR][1000 genomes]
rs72702293	1.00[EUR][1000 genomes]
rs73001391	1.00[EUR][1000 genomes]
rs7517158	1.00[EUR][1000 genomes]
rs7517162	1.00[EUR][1000 genomes]
rs7548383	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
3	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv998756	chr1:155080090-155136545	Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
5	nsv464084	chr1:155082298-155194980	Weak transcription Bivalent Enhancer Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	366 gene(s)	inside rSNPs	diseases
6	nsv547961	chr1:155082298-155194980	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	366 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155078600-155098400	Weak transcription	Right Atrium	heart
2	chr1:155089200-155093400	Weak transcription	Gastric	stomach
3	chr1:155089200-155095000	Weak transcription	Hela-S3	cervix
4	chr1:155089600-155096800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:155090200-155094000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr1:155091400-155097000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:155091800-155097000	Weak transcription	Colonic Mucosa	Colon
8	chr1:155092200-155094200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:155092400-155093600	Enhancers	Placenta	Placenta
10	chr1:155092400-155094000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:155092400-155094000	Enhancers	Fetal Intestine Large	intestine
12	chr1:155092600-155093400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr1:155092600-155093600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:155092600-155094000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:155092600-155094000	Enhancers	Fetal Intestine Small	intestine
16	chr1:155092600-155094200	Enhancers	Stomach Mucosa	stomach
17	chr1:155093000-155094000	Flanking Active TSS	K562	blood
18	chr1:155093000-155095600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr1:155093000-155096200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links