Variant report

Variant	rs67333363
Chromosome Location	chr1:155058046-155058047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:154970467..154977420-chr1:155052491..155060843,19	MCF-7	breast:
2	chr1:155056804..155058815-chr1:155240733..155243389,2	K562	blood:
3	chr1:155054721..155059011-chr1:155196588..155199418,3	K562	blood:
4	chr1:154964452..154967253-chr1:155056119..155059048,2	MCF-7	breast:
5	chr1:155056523..155059485-chr1:155177407..155180672,3	K562	blood:
6	chr1:155055553..155060043-chr1:155139937..155145817,8	K562	blood:
7	chr1:155056284..155060443-chr1:155143066..155147437,8	MCF-7	breast:
8	chr1:155057862..155060802-chr1:155145958..155147519,2	K562	blood:
9	chr1:154938611..154941490-chr1:155057349..155058983,2	MCF-7	breast:
10	chr1:154967268..154977621-chr1:155049775..155059069,28	MCF-7	breast:
11	chr1:155057376..155058095-chr11:8892407..8893076,2	Hela-S3	cervix:
12	chr1:154949477..154951157-chr1:155056165..155059082,2	K562	blood:
13	chr1:155056491..155066482-chr1:155136760..155147519,21	K562	blood:
14	chr1:154529703..154532693-chr1:155057067..155059987,2	K562	blood:
15	chr1:155055823..155058786-chr1:155242892..155244549,2	MCF-7	breast:
16	chr1:155034804..155037518-chr1:155055135..155058799,58	K562	blood:
17	chr1:155057860..155058542-chr15:93352502..93353219,2	Hela-S3	cervix:
18	chr1:155058008..155061537-chr1:155106258..155110440,4	K562	blood:
19	chr1:154908623..154911481-chr1:155056952..155059272,2	MCF-7	breast:
20	chr1:155056751..155059603-chr1:155143653..155146036,8	MCF-7	breast:
21	chr1:155057428..155058094-chr13:111367338..111368221,2	Hela-S3	cervix:
22	chr1:154933652..154935727-chr1:155055132..155058797,5	MCF-7	breast:
23	chr1:155049589..155073019-chr1:155085330..155115362,149	MCF-7	breast:
24	chr1:154931665..154935409-chr1:155055892..155060477,8	MCF-7	breast:
25	chr1:155013927..155032770-chr1:155044175..155061131,53	MCF-7	breast:
26	chr1:155057155..155059036-chr1:155292671..155295446,3	MCF-7	breast:
27	chr1:155052471..155058946-chr1:155106509..155113930,10	K562	blood:
28	chr1:155020796..155024695-chr1:155055166..155059924,7	K562	blood:
29	chr1:155057360..155058066-chr7:26240058..26240666,2	HCT-116	colon:
30	chr1:155055391..155058180-chr1:155162719..155165085,4	K562	blood:
31	chr1:155052798..155059451-chr1:155162483..155166744,9	K562	blood:
32	chr1:155057429..155059186-chr1:155111199..155113045,2	K562	blood:
33	chr1:155034120..155034643-chr1:155057623..155058276,2	K562	blood:
34	chr1:155056530..155058756-chr1:155164406..155166791,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169241	Chromatin interaction
ENSG00000169231	Chromatin interaction
ENSG00000160685	Chromatin interaction
ENSG00000225855	Chromatin interaction
ENSG00000160714	Chromatin interaction
ENSG00000163352	Chromatin interaction
ENSG00000163344	Chromatin interaction
ENSG00000160753	Chromatin interaction
ENSG00000163463	Chromatin interaction
ENSG00000143537	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000231064	Chromatin interaction
ENSG00000169242	Chromatin interaction
ENSG00000173171	Chromatin interaction
ENSG00000163348	Chromatin interaction
ENSG00000251246	Chromatin interaction
ENSG00000202027	Chromatin interaction
ENSG00000166444	Chromatin interaction
ENSG00000153487	Chromatin interaction
ENSG00000271380	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000185499	Chromatin interaction
ENSG00000176444	Chromatin interaction
ENSG00000163462	Chromatin interaction
ENSG00000271748	Chromatin interaction
ENSG00000160688	Chromatin interaction
ENSG00000173207	Chromatin interaction
ENSG00000160691	Chromatin interaction
ENSG00000270361	Chromatin interaction
ENSG00000160766	Chromatin interaction
ENSG00000179085	Chromatin interaction
ENSG00000232093	Chromatin interaction
ENSG00000243364	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10908457	0.88[EUR][1000 genomes]
rs11264324	0.90[EUR][1000 genomes]
rs11264325	0.90[EUR][1000 genomes]
rs11264326	0.90[EUR][1000 genomes]
rs12081692	0.90[EUR][1000 genomes]
rs12126992	0.90[EUR][1000 genomes]
rs13375955	0.90[EUR][1000 genomes]
rs1462854	0.98[EUR][1000 genomes]
rs57157364	1.00[EUR][1000 genomes]
rs58925616	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66474937	0.88[EUR][1000 genomes]
rs72702273	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72702285	0.90[EUR][1000 genomes]
rs72702288	0.90[EUR][1000 genomes]
rs72702293	0.90[EUR][1000 genomes]
rs73001391	0.90[EUR][1000 genomes]
rs7517158	0.90[EUR][1000 genomes]
rs7517162	0.90[EUR][1000 genomes]
rs7548383	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
3	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155056800-155058600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:155057000-155058400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr1:155057000-155058800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr1:155057000-155058800	Active TSS	A549	lung
5	chr1:155057200-155058200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:155057200-155058200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:155057200-155058200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:155057200-155058200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:155057200-155058200	Active TSS	Brain Germinal Matrix	brain
10	chr1:155057200-155058200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:155057200-155058200	Active TSS	Colon Smooth Muscle	Colon
12	chr1:155057200-155058200	Active TSS	Fetal Brain Female	brain
13	chr1:155057200-155058200	Active TSS	Fetal Stomach	stomach
14	chr1:155057200-155058200	Active TSS	Left Ventricle	heart
15	chr1:155057200-155058200	Active TSS	Placenta Amnion	Placenta Amnion
16	chr1:155057200-155058200	Active TSS	Thymus	Thymus
17	chr1:155057200-155058400	Active TSS	Fetal Kidney	kidney
18	chr1:155057200-155058400	Active TSS	HSMMtube	muscle
19	chr1:155057200-155058400	Active TSS	NHDF-Ad	bronchial
20	chr1:155057200-155058600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr1:155057200-155058600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:155057200-155058600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:155057200-155058600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:155057200-155058600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr1:155057200-155058600	Active TSS	Brain Angular Gyrus	brain
26	chr1:155057200-155058800	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr1:155057200-155058800	Active TSS	H1 Cell Line	embryonic stem cell
28	chr1:155057200-155058800	Active TSS	H9 Cell Line	embryonic stem cell
29	chr1:155057200-155058800	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr1:155057200-155058800	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr1:155057200-155058800	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr1:155057200-155058800	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr1:155057200-155058800	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr1:155057200-155058800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr1:155057200-155058800	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr1:155057200-155059000	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr1:155057400-155058200	Active TSS	Aorta	Aorta
38	chr1:155057400-155058200	Active TSS	Fetal Heart	heart
39	chr1:155057400-155058200	Active TSS	Gastric	stomach
40	chr1:155057400-155058200	Active TSS	Sigmoid Colon	Sigmoid Colon
41	chr1:155057400-155058200	Active TSS	Small Intestine	intestine
42	chr1:155057400-155058200	Bivalent/Poised TSS	HepG2	liver
43	chr1:155057400-155058400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr1:155057400-155058400	Active TSS	Psoas Muscle	Psoas
45	chr1:155057400-155058600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr1:155057400-155058600	Flanking Active TSS	Placenta	Placenta
47	chr1:155057400-155058600	Active TSS	Ovary	ovary
48	chr1:155057800-155058600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr1:155057800-155058600	Active TSS	Right Atrium	heart
50	chr1:155057800-155058600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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