Variant report

Variant	rs12083609
Chromosome Location	chr1:173282025-173282026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10912581	0.88[AFR][1000 genomes]
rs10912585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10912586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10912587	0.93[AFR][1000 genomes]
rs10912589	0.94[AFR][1000 genomes]
rs11487380	0.93[AFR][1000 genomes]
rs12080065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080593	0.97[AFR][1000 genomes]
rs12093193	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28498292	0.87[AMR][1000 genomes]
rs60178210	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173264600-173298200	Weak transcription	HSMMtube	muscle
2	chr1:173282000-173282200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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