Variant report

Variant	rs28498292
Chromosome Location	chr1:173272047-173272048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10912581	1.00[ASN][1000 genomes]
rs10912585	0.87[AMR][1000 genomes]
rs10912586	0.87[AMR][1000 genomes]
rs12080065	0.87[AMR][1000 genomes]
rs12083609	0.87[AMR][1000 genomes]
rs12093193	0.87[AMR][1000 genomes]
rs60178210	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173260400-173274200	Weak transcription	Aorta	Aorta
2	chr1:173264600-173298200	Weak transcription	HSMMtube	muscle
3	chr1:173268000-173272200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:173268600-173272400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:173268800-173272200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:173269600-173272400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:173270000-173273600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:173270200-173273000	Weak transcription	GM12878-XiMat	blood
9	chr1:173271000-173275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:173271200-173272800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:173271600-173272600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:173271800-173272400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:173271800-173272800	Flanking Active TSS	K562	blood
14	chr1:173272000-173272800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:173272000-173273000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:173272000-173273400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr1:173272000-173274000	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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