Variant report

Variant	rs12084218
Chromosome Location	chr1:174888051-174888052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174887340..174889022-chr1:174889094..174890762,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10912844	0.84[AFR][1000 genomes]
rs10912849	0.85[AFR][1000 genomes]
rs10912850	0.85[AFR][1000 genomes]
rs12069057	0.90[AFR][1000 genomes]
rs12087589	0.87[AFR][1000 genomes]
rs12090265	0.98[AFR][1000 genomes]
rs16847563	0.80[AFR][1000 genomes]
rs16847576	0.90[AFR][1000 genomes]
rs35435376	0.90[AFR][1000 genomes]
rs61828143	0.85[AFR][1000 genomes]
rs61828144	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174861400-174902400	Weak transcription	Left Ventricle	heart
2	chr1:174872000-174889200	Weak transcription	Primary B cells from cord blood	blood
3	chr1:174872400-174888800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:174872800-174900400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:174873400-174897200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:174874000-174910000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:174874200-174938200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:174876800-174933600	Weak transcription	Aorta	Aorta
9	chr1:174883600-174889200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:174883600-174900600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:174883800-174889600	Weak transcription	Fetal Lung	lung
12	chr1:174885400-174892600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:174886000-174891400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:174886000-174897000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:174886000-174907200	Weak transcription	Primary T cells from cord blood	blood
16	chr1:174886200-174889000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:174886200-174889400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:174886400-174888400	Weak transcription	Fetal Intestine Large	intestine
19	chr1:174886400-174889400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr1:174886400-174891200	Weak transcription	Gastric	stomach
21	chr1:174886400-174896600	Weak transcription	Pancreas	Pancrea
22	chr1:174886400-174911600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr1:174886600-174889000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:174886600-174889000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr1:174886800-174888800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:174887400-174888600	Strong transcription	Fetal Intestine Small	intestine
27	chr1:174887400-174890000	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr1:174888000-174888800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links