Variant report

Variant	rs16847576
Chromosome Location	chr1:174824432-174824433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10912844	0.93[AFR][1000 genomes]
rs10912849	0.85[LWK][hapmap]
rs12041631	1.00[GIH][hapmap]
rs12067259	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap]
rs12069057	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs12084218	0.90[AFR][1000 genomes]
rs12090265	0.88[AFR][1000 genomes]
rs12095410	1.00[ASW][hapmap]
rs12125988	1.00[GIH][hapmap]
rs12127972	1.00[CHB][hapmap]
rs16847563	0.85[LWK][hapmap];0.80[AFR][1000 genomes]
rs16847633	0.85[LWK][hapmap]
rs16847706	0.85[LWK][hapmap]
rs35435376	1.00[AFR][1000 genomes]
rs61828117	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174796600-174833400	Weak transcription	Primary B cells from cord blood	blood
2	chr1:174818200-174828000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:174819200-174843600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:174820200-174827600	Weak transcription	Left Ventricle	heart
5	chr1:174824400-174824600	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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