Variant report

Variant	rs16847706
Chromosome Location	chr1:174983207-174983208
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:174967096..174970659-chr1:174981028..174985682,6	MCF-7	breast:
2	chr1:174968752..174972930-chr1:174980465..174984788,7	MCF-7	breast:
3	chr1:174982973..174985491-chr1:174991343..174993295,2	MCF-7	breast:
4	chr1:174845505..174847927-chr1:174983132..174985506,2	K562	blood:

Variant related genes	Relation type
ENSG00000120333	Chromatin interaction
ENSG00000116161	Chromatin interaction
ENSG00000152061	Chromatin interaction
ENSG00000206659	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1002125	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10489333	0.83[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10912849	1.00[ASW][hapmap];0.83[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.92[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs10912850	0.83[CEU][hapmap];0.89[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs10912870	0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12058943	0.81[YRI][hapmap]
rs12065854	0.83[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.93[TSI][hapmap]
rs12067259	0.95[LWK][hapmap];0.81[YRI][hapmap]
rs12068100	0.84[AFR][1000 genomes]
rs12069057	0.95[LWK][hapmap];0.81[YRI][hapmap]
rs12073786	0.84[AFR][1000 genomes]
rs12074821	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12087196	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12088588	0.88[ASN][1000 genomes]
rs12562194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16847563	1.00[ASW][hapmap];0.83[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.91[YRI][hapmap]
rs16847576	0.85[LWK][hapmap]
rs16847633	1.00[ASW][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16847812	0.83[CHB][hapmap]
rs16865298	0.81[ASN][1000 genomes]
rs2285209	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28660133	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41266068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41266072	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61828121	0.81[AMR][1000 genomes]
rs61828143	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61828148	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61828149	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61828151	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61828152	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828156	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61828157	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6662806	0.81[ASN][1000 genomes]
rs6667611	0.83[CHB][hapmap]
rs6676700	0.83[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16847706	SERPINC1	cis	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174970000-174991800	Weak transcription	Stomach Mucosa	stomach
2	chr1:174970800-174986000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:174971000-174991600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:174973000-174990600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:174973200-174983600	Strong transcription	K562	blood
6	chr1:174973200-174987800	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:174973200-174987800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:174973200-174988200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:174973600-174987800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:174973600-174988200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:174973600-174990400	Strong transcription	Primary T cells from cord blood	blood
12	chr1:174973800-174983800	Strong transcription	NH-A	brain
13	chr1:174973800-174984000	Strong transcription	Hela-S3	cervix
14	chr1:174973800-174984600	Strong transcription	NHDF-Ad	bronchial
15	chr1:174973800-174987600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:174973800-174987800	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr1:174973800-174987800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:174973800-174987800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr1:174973800-174987800	Strong transcription	Fetal Intestine Large	intestine
20	chr1:174973800-174987800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr1:174973800-174988200	Strong transcription	Primary hematopoietic stem cells	blood
22	chr1:174973800-174988400	Strong transcription	Fetal Thymus	thymus
23	chr1:174973800-174988800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr1:174973800-174988800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr1:174973800-174989800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr1:174974000-174987800	Strong transcription	Liver	Liver
27	chr1:174974000-174988200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:174974000-174988400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr1:174974200-174984000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:174974200-174984400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:174974200-174985200	Strong transcription	Fetal Muscle Leg	muscle
32	chr1:174974200-174987600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:174974200-174987800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr1:174974200-174987800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr1:174974200-174987800	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr1:174974200-174987800	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr1:174974200-174987800	Strong transcription	A549	lung
38	chr1:174974200-174987800	Strong transcription	HMEC	breast
39	chr1:174974200-174987800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr1:174974200-174988200	Strong transcription	Thymus	Thymus
41	chr1:174974200-174988400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr1:174974200-174988400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr1:174974200-174988800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:174974200-174990200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr1:174974400-174983600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr1:174974400-174984000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:174974400-174984000	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr1:174974400-174985000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:174974400-174985600	Strong transcription	Adipose Nuclei	Adipose
50	chr1:174974400-174987600	Strong transcription	Primary monocytes fromperipheralblood	blood

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