Variant report

Variant	rs12562194
Chromosome Location	chr1:174981806-174981807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174967096..174970659-chr1:174981028..174985682,6	MCF-7	breast:
2	chr1:174968752..174972930-chr1:174980465..174984788,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116161	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1002125	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10489333	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10912849	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10912850	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10912870	0.92[ASN][1000 genomes]
rs12065854	0.80[EUR][1000 genomes]
rs12068100	0.84[AFR][1000 genomes]
rs12073786	0.84[AFR][1000 genomes]
rs12074821	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12087196	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12088588	0.88[ASN][1000 genomes]
rs12565944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16847633	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16847706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16865298	0.81[ASN][1000 genomes]
rs2285209	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28660133	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41266068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41266072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61828121	0.81[AMR][1000 genomes]
rs61828143	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61828144	0.80[EUR][1000 genomes]
rs61828148	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61828149	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61828151	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61828152	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61828156	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61828157	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6662806	0.81[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174970000-174982400	Weak transcription	Esophagus	oesophagus
2	chr1:174970000-174991800	Weak transcription	Stomach Mucosa	stomach
3	chr1:174970800-174986000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:174971000-174991600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:174973000-174982200	Weak transcription	Fetal Brain Male	brain
6	chr1:174973000-174990600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:174973200-174982000	Weak transcription	Small Intestine	intestine
8	chr1:174973200-174983600	Strong transcription	K562	blood
9	chr1:174973200-174987800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:174973200-174987800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:174973200-174988200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:174973600-174987800	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:174973600-174988200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:174973600-174990400	Strong transcription	Primary T cells from cord blood	blood
15	chr1:174973800-174983800	Strong transcription	NH-A	brain
16	chr1:174973800-174984000	Strong transcription	Hela-S3	cervix
17	chr1:174973800-174984600	Strong transcription	NHDF-Ad	bronchial
18	chr1:174973800-174987600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr1:174973800-174987800	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr1:174973800-174987800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:174973800-174987800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr1:174973800-174987800	Strong transcription	Fetal Intestine Large	intestine
23	chr1:174973800-174987800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr1:174973800-174988200	Strong transcription	Primary hematopoietic stem cells	blood
25	chr1:174973800-174988400	Strong transcription	Fetal Thymus	thymus
26	chr1:174973800-174988800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr1:174973800-174988800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr1:174973800-174989800	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr1:174974000-174987800	Strong transcription	Liver	Liver
30	chr1:174974000-174988200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:174974000-174988400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr1:174974200-174984000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:174974200-174984400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:174974200-174985200	Strong transcription	Fetal Muscle Leg	muscle
35	chr1:174974200-174987600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:174974200-174987800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:174974200-174987800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr1:174974200-174987800	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr1:174974200-174987800	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr1:174974200-174987800	Strong transcription	A549	lung
41	chr1:174974200-174987800	Strong transcription	HMEC	breast
42	chr1:174974200-174987800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr1:174974200-174988200	Strong transcription	Thymus	Thymus
44	chr1:174974200-174988400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:174974200-174988400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:174974200-174988800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr1:174974200-174990200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr1:174974400-174983600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr1:174974400-174984000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:174974400-174984000	Strong transcription	Muscle Satellite Cultured Cells	--

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