Variant report

Variant	rs12095410
Chromosome Location	chr1:174914566-174914567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174909477..174911004-chr1:174913375..174915350,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10912865	0.82[AFR][1000 genomes]
rs12067259	1.00[ASW][hapmap]
rs12069057	1.00[ASW][hapmap]
rs16847576	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1794782	chr1:174900761-174925112	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174874200-174938200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:174876800-174933600	Weak transcription	Aorta	Aorta
3	chr1:174899800-174915200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:174901000-174922200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:174908000-174914600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:174908000-174926600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:174908000-174932400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr1:174908200-174914800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:174908200-174915200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:174908200-174924200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr1:174908600-174927400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:174908800-174932200	Weak transcription	Primary T cells from cord blood	blood
13	chr1:174910000-174916000	Enhancers	Fetal Intestine Large	intestine
14	chr1:174910400-174922400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:174910400-174932400	Weak transcription	HSMMtube	muscle
16	chr1:174910600-174914800	Weak transcription	K562	blood
17	chr1:174910800-174925800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr1:174910800-174957000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr1:174911400-174915000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:174912200-174918400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:174912200-174925400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:174912400-174922400	Weak transcription	Right Atrium	heart
23	chr1:174912400-174922600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:174912400-174923800	Weak transcription	Gastric	stomach
25	chr1:174912600-174914600	Weak transcription	Stomach Mucosa	stomach
26	chr1:174912600-174914800	Weak transcription	Primary B cells from cord blood	blood
27	chr1:174912600-174914800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr1:174912600-174914800	Weak transcription	Fetal Kidney	kidney
29	chr1:174912600-174914800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr1:174912600-174918600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr1:174912600-174921800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr1:174912600-174922600	Weak transcription	Brain Angular Gyrus	brain
33	chr1:174912600-174923800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr1:174912600-174934800	Weak transcription	Left Ventricle	heart
35	chr1:174913000-174915400	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr1:174913200-174915000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr1:174913400-174915800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:174913800-174914800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr1:174913800-174915400	Enhancers	Fetal Heart	heart
40	chr1:174913800-174915400	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr1:174913800-174915800	Enhancers	Fetal Intestine Small	intestine
42	chr1:174913800-174922800	Weak transcription	Pancreas	Pancrea
43	chr1:174914000-174915000	Enhancers	Brain Anterior Caudate	brain
44	chr1:174914200-174915000	Enhancers	Fetal Lung	lung
45	chr1:174914200-174915200	Enhancers	Brain Hippocampus Middle	brain
46	chr1:174914200-174915600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr1:174914200-174915600	Enhancers	Duodenum Mucosa	Duodenum
48	chr1:174914200-174915600	Enhancers	Small Intestine	intestine
49	chr1:174914400-174915400	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links