Variant report

Variant	rs12085875
Chromosome Location	chr1:211006816-211006817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10863865	0.81[ASN][1000 genomes]
rs11119614	0.81[ASN][1000 genomes]
rs11119620	0.80[ASN][1000 genomes]
rs12059106	0.80[ASN][1000 genomes]
rs12059948	0.80[ASN][1000 genomes]
rs12069980	0.80[ASN][1000 genomes]
rs12078503	0.81[ASN][1000 genomes]
rs12092880	0.82[ASN][1000 genomes]
rs12094756	0.95[ASN][1000 genomes]
rs17016986	0.82[ASN][1000 genomes]
rs28402221	0.81[ASN][1000 genomes]
rs55646513	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58579065	0.81[ASN][1000 genomes]
rs59197723	0.83[ASN][1000 genomes]
rs7545932	0.81[ASN][1000 genomes]
rs7553542	0.88[ASN][1000 genomes]
rs9730476	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210996600-211015000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:211005200-211008000	Weak transcription	HSMM	muscle
3	chr1:211005200-211014200	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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