Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10863864	0.82[ASN][1000 genomes]
rs10863865	0.87[ASN][1000 genomes]
rs11119614	0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs11119620	0.86[ASN][1000 genomes]
rs11119624	0.82[LWK][hapmap];0.84[MKK][hapmap];0.93[YRI][hapmap]
rs11119626	0.84[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs11485201	0.86[JPT][hapmap]
rs11580309	0.84[ASN][1000 genomes]
rs12058816	0.85[ASN][1000 genomes]
rs12059106	0.86[ASN][1000 genomes]
rs12059948	0.86[ASN][1000 genomes]
rs12065074	0.85[ASN][1000 genomes]
rs12069980	0.86[ASN][1000 genomes]
rs12078503	0.85[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs12085875	0.95[ASN][1000 genomes]
rs12092880	0.88[ASN][1000 genomes]
rs1343150	0.83[GIH][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs17016986	0.85[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2358094	0.84[ASN][1000 genomes]
rs28402221	0.87[ASN][1000 genomes]
rs55646513	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs56336842	0.84[ASN][1000 genomes]
rs58579065	0.85[ASN][1000 genomes]
rs59197723	0.87[ASN][1000 genomes]
rs6668151	0.80[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs67483865	0.84[ASN][1000 genomes]
rs7545932	0.85[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs7553542	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9730476	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12094756	ATF3	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211010600-211016400	Weak transcription	HSMM	muscle
2	chr1:211015000-211017000	Enhancers	Brain Hippocampus Middle	brain
3	chr1:211015200-211016600	Enhancers	Brain Angular Gyrus	brain
4	chr1:211015400-211016600	Enhancers	Brain Anterior Caudate	brain
5	chr1:211015400-211016600	Enhancers	Brain Cingulate Gyrus	brain
6	chr1:211015400-211016600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr1:211015400-211016600	Enhancers	Brain Substantia Nigra	brain

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