Variant report

Variant	rs1208653
Chromosome Location	chr10:38253826-38253827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11011388	0.88[AMR][1000 genomes]
rs200940	0.82[AMR][1000 genomes]
rs2749592	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1051121	chr10:38155991-38426204	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv540565	chr10:38155991-38426204	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1052703	chr10:38174640-38266472	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv534122	chr10:38240258-38356008	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38239600-38264400	Weak transcription	Fetal Heart	heart
2	chr10:38239600-38264600	Weak transcription	Stomach Mucosa	stomach
3	chr10:38240800-38264000	Weak transcription	NHLF	lung
4	chr10:38241800-38264400	Weak transcription	NHEK	skin
5	chr10:38242600-38264400	Weak transcription	HUVEC	blood vessel
6	chr10:38243600-38256000	Weak transcription	HSMMtube	muscle
7	chr10:38245800-38256000	Weak transcription	Osteobl	bone
8	chr10:38246400-38257600	Weak transcription	Psoas Muscle	Psoas
9	chr10:38246400-38264000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:38246400-38264400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:38247000-38263000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:38247400-38257600	Weak transcription	NHDF-Ad	bronchial
13	chr10:38249000-38254000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:38251800-38259200	ZNF genes & repeats	Brain Germinal Matrix	brain
15	chr10:38252200-38260000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:38252200-38260600	ZNF genes & repeats	Fetal Brain Female	brain
17	chr10:38252800-38254000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:38252800-38256600	ZNF genes & repeats	Dnd41	blood
19	chr10:38252800-38256800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:38252800-38259000	ZNF genes & repeats	Fetal Muscle Leg	muscle
21	chr10:38253000-38254000	ZNF genes & repeats	Colon Smooth Muscle	Colon
22	chr10:38253000-38254000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
23	chr10:38253000-38254200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:38253000-38254200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr10:38253000-38254400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:38253000-38254400	ZNF genes & repeats	Fetal Stomach	stomach
27	chr10:38253000-38254600	ZNF genes & repeats	Brain Hippocampus Middle	brain
28	chr10:38253000-38254800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
29	chr10:38253000-38254800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
30	chr10:38253000-38256400	ZNF genes & repeats	Liver	Liver
31	chr10:38253000-38256600	ZNF genes & repeats	Fetal Intestine Small	intestine
32	chr10:38253000-38258600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
33	chr10:38253200-38254000	ZNF genes & repeats	Primary B cells from cord blood	blood
34	chr10:38253200-38254200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
35	chr10:38253200-38254400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
36	chr10:38253200-38254400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
37	chr10:38253200-38254400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:38253200-38254400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:38253200-38254400	ZNF genes & repeats	Brain Angular Gyrus	brain
40	chr10:38253200-38254600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:38253200-38254600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
42	chr10:38253200-38254800	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr10:38253200-38254800	ZNF genes & repeats	Brain Anterior Caudate	brain
44	chr10:38253200-38254800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:38253200-38255000	ZNF genes & repeats	Fetal Brain Male	brain
46	chr10:38253200-38255200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:38253200-38256000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
48	chr10:38253200-38256400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
49	chr10:38253200-38256600	ZNF genes & repeats	Primary T cells from cord blood	blood
50	chr10:38253200-38260000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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