Variant report

Variant	rs200940
Chromosome Location	chr10:38141099-38141100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11011388	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1208653	0.82[AMR][1000 genomes]
rs2749592	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38123000-38144400	Weak transcription	NHEK	skin
2	chr10:38124000-38144400	Weak transcription	NH-A	brain
3	chr10:38125200-38144400	Weak transcription	Psoas Muscle	Psoas
4	chr10:38125600-38142800	Weak transcription	NHDF-Ad	bronchial
5	chr10:38125800-38143200	Weak transcription	HepG2	liver
6	chr10:38125800-38144400	Weak transcription	HMEC	breast
7	chr10:38126600-38145600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:38126800-38144800	Weak transcription	Thymus	Thymus
9	chr10:38127000-38142800	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:38127000-38143600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:38127000-38143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:38127000-38143800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:38127000-38144200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:38127000-38144400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:38127000-38144400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:38127000-38144400	Weak transcription	HSMMtube	muscle
17	chr10:38127000-38144600	Weak transcription	K562	blood
18	chr10:38127000-38145200	Weak transcription	Gastric	stomach
19	chr10:38127000-38145600	Weak transcription	Colonic Mucosa	Colon
20	chr10:38127200-38143000	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:38127200-38144400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:38127200-38144400	Weak transcription	Osteobl	bone
23	chr10:38127200-38145800	Weak transcription	Placenta	Placenta
24	chr10:38127400-38142800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:38127400-38143000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:38127400-38143600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:38127400-38144000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr10:38127400-38144000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:38127400-38144400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:38127400-38144400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:38127600-38143400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:38127600-38143400	Weak transcription	Brain Anterior Caudate	brain
33	chr10:38127600-38145200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:38127800-38143400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr10:38128000-38144400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:38128200-38143800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:38128200-38144400	Weak transcription	Left Ventricle	heart
38	chr10:38128400-38145000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:38128800-38143200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:38128800-38145400	Weak transcription	Primary B cells from cord blood	blood
41	chr10:38129400-38143600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:38129800-38142800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr10:38132000-38141200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:38132000-38144400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr10:38132000-38145200	Weak transcription	Aorta	Aorta
46	chr10:38132200-38142800	Weak transcription	Dnd41	blood
47	chr10:38132200-38144600	Weak transcription	Small Intestine	intestine
48	chr10:38132400-38145800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:38133200-38143200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr10:38133200-38144400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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