Variant report

Variant	rs1208708
Chromosome Location	chr10:38085576-38085577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38082238..38084257-chr10:38085270..38087411,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1022698	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764147	0.82[ASN][1000 genomes]
rs10827835	0.88[ASN][1000 genomes]
rs11011343	0.92[ASN][1000 genomes]
rs11011351	0.99[ASN][1000 genomes]
rs11011361	0.80[ASN][1000 genomes]
rs1208681	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1208684	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1208689	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1208767	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12774732	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1779017	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1814077	0.93[ASN][1000 genomes]
rs200903	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs200910	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs200924	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs200935	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs200936	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs200937	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs200939	0.86[ASN][1000 genomes]
rs200943	0.88[ASN][1000 genomes]
rs289638	0.84[ASN][1000 genomes]
rs289648	0.90[ASN][1000 genomes]
rs289649	0.93[ASN][1000 genomes]
rs4934906	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4934907	0.99[ASN][1000 genomes]
rs4934912	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4934916	0.86[ASN][1000 genomes]
rs7099777	0.81[ASN][1000 genomes]
rs719569	0.88[ASN][1000 genomes]
rs9417256	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1208708	ZNF37A///ZNF37B	Cis_1M	lymphoblastoid	RTeQTL
rs1208708	HSD17B7///HSD17B7P2///LOC730412	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38081200-38092000	Weak transcription	Ovary	ovary
2	chr10:38081200-38092200	Weak transcription	Pancreas	Pancrea
3	chr10:38081200-38097200	Weak transcription	Aorta	Aorta
4	chr10:38082600-38086400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:38083200-38086000	ZNF genes & repeats	Liver	Liver
6	chr10:38084000-38090600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:38084400-38092200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:38085000-38088800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr10:38085400-38100800	Weak transcription	Left Ventricle	heart

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